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authorJohannes Ranke <jranke@uni-bremen.de>2020-07-15 14:11:25 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-07-15 14:11:25 +0200
commit6acd6e343f2802b912e60b3fd3bd6b9011ba2c06 (patch)
treefcb5527b86595b7c077cb574aecc62ff99a26e26 /test_dev.log
parent9f8e1eb33b586beb7e889212bdababa081b6ff67 (diff)
Improve tests
- Reduce significant digits for mkinfit(..., quiet = TRUE) as R and R-devel were different on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
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+Loading mkin
+Testing mkin
+✔ | OK F W S | Context
+ ⠏ | 0 | AIC calculation ✔ | 4 | AIC calculation
+ ⠏ | 0 | Export dataset for reading into CAKE ✔ | 2 | Export dataset for reading into CAKE
+ ⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠏ | 10 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s]
+ ⠏ | 0 | Calculation of FOCUS chi2 error levels ⠙ | 2 | Calculation of FOCUS chi2 error levels ⠸ | 4 | Calculation of FOCUS chi2 error levels ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s]
+ ⠏ | 0 | Fitting the SFORB model ⠋ | 1 | Fitting the SFORB model ⠼ | 5 | Fitting the SFORB model ✔ | 7 | Fitting the SFORB model [3.0 s]
+ ⠏ | 0 | Analytical solutions for coupled models ⠋ | 1 | Analytical solutions for coupled models ⠙ | 2 | Analytical solutions for coupled models ⠹ | 3 | Analytical solutions for coupled models ⠸ | 4 | Analytical solutions for coupled models ⠼ | 5 | Analytical solutions for coupled models ✔ | 5 | Analytical solutions for coupled models [2.9 s]
+ ⠏ | 0 | Calculation of Akaike weights ✔ | 5 | Calculation of Akaike weights
+ ⠏ | 0 | Confidence intervals and p-values ⠙ | 2 | Confidence intervals and p-values ⠏ | 10 | Confidence intervals and p-values ✔ | 10 | Confidence intervals and p-values [0.9 s]
+ ⠏ | 0 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠙ | 12 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 14 | Error model fitting ✔ | 14 | Error model fitting [3.7 s]
+ ⠏ | 0 | Test fitting the decline of metabolites from their maximum ⠹ | 3 | Test fitting the decline of metabolites from their maximum ⠸ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2 s]
+ ⠏ | 0 | Fitting the logistic model ⠋ | 1 | Fitting the logistic model ✔ | 1 | Fitting the logistic model [0.2 s]
+ ⠏ | 0 | Test dataset class mkinds used in gmkin ✔ | 1 | Test dataset class mkinds used in gmkin
+ ⠏ | 0 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [0.6 s]
+ ⠏ | 0 | mkinmod model generation and printing ⠧ | 8 | mkinmod model generation and printing ✔ | 8 | mkinmod model generation and printing [0.2 s]
+ ⠏ | 0 | Model predictions with mkinpredict ⠋ | 1 | Model predictions with mkinpredict ✔ | 3 | Model predictions with mkinpredict [0.3 s]
+ ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s]
+ ⠏ | 0 | Nonlinear mixed-effects models ⠋ | 1 | Nonlinear mixed-effects models ⠙ | 2 | Nonlinear mixed-effects models ⠸ | 4 | Nonlinear mixed-effects models ⠼ | 5 | Nonlinear mixed-effects models ⠴ | 6 | Nonlinear mixed-effects models ⠧ | 8 | Nonlinear mixed-effects models ⠇ | 9 | Nonlinear mixed-effects models ✔ | 9 | Nonlinear mixed-effects models [7.0 s]
+ ⠏ | 0 | Plotting ⠋ | 1 | Plotting ⠸ | 4 | Plotting ⠦ | 7 | Plotting ⠇ | 9 | Plotting ⠙ | 12 | Plotting ✔ | 14 | Plotting [1.3 s]
+ ⠏ | 0 | Residuals extracted from mkinfit models ✔ | 4 | Residuals extracted from mkinfit models
+ ⠏ | 0 | Complex test case from Schaefer et al. (2007) Piacenza paper ⠋ | 1 | Complex test case from Schaefer et al. (2007) Piacenza paper ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3 s]
+ ⠏ | 0 | Summary ✔ | 4 | Summary
+ ⠏ | 0 | Summaries of old mkinfit objects ✔ | 1 | Summaries of old mkinfit objects
+ ⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014) ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s]
+ ⠏ | 0 | Hypothesis tests ⠼ | 5 | Hypothesis tests ⠴ | 6 | Hypothesis tests ⠧ | 8 | Hypothesis tests ⠇ | 9 | Hypothesis tests ✔ | 9 | Hypothesis tests [7.1 s]
+ ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
+
+══ Results ═════════════════════════════════════════════════════════════════════
+Duration: 35.7 s
+
+OK: 161
+Failed: 0
+Warnings: 0
+Skipped: 0

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