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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-09 13:08:01 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-09 13:08:01 +0100 |
| commit | 3b15daaf373ebc36da2eb92f2e37ed569731f07d (patch) | |
| tree | 75339d1b69c30edf26251a48fedeee70b6069d82 /tests/testthat/setup_script.R | |
| parent | c6944440507b4b793a3715704122dfffb350a5a0 (diff) | |
More tests
Diffstat (limited to 'tests/testthat/setup_script.R')
| -rw-r--r-- | tests/testthat/setup_script.R | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index 1bedbf65..e3b56fb3 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -94,7 +94,7 @@ fit_obs_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "obs", quiet = TR fit_tc_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "tc", quiet = TRUE, error_model_algorithm = "threestep") -# Mixed models data +# Mixed models data and set.seed(123456) sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120) n <- n_biphasic <- 15 @@ -153,6 +153,12 @@ ds_biphasic <- lapply(ds_biphasic_mean, function(ds) { # Mixed model fits mmkin_sfo_1 <- mmkin("SFO", ds_sfo, quiet = TRUE, error_model = "tc") sfo_saemix_1 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "saemix") + +mmkin_dfop_1 <- mmkin("DFOP", ds_dfop, quiet = TRUE) +dfop_saemix_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin") +dfop_saemix_2 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "saemix") +dfop_nlme_1 <- nlme(mmkin_dfop_1) + mmkin_biphasic <- mmkin(list("DFOP-SFO" = DFOP_SFO), ds_biphasic, quiet = TRUE) mmkin_biphasic_mixed <- mixed(mmkin_biphasic) nlme_biphasic <- nlme(mmkin_biphasic) @@ -163,9 +169,9 @@ ds_uba <- lapply(experimental_data_for_UBA_2019[6:10], function(x) subset(x$data[c("name", "time", "value")])) names(ds_uba) <- paste("Dataset", 6:10) sfo_sfo_uba <- mkinmod(parent = mkinsub("SFO", "A1"), - A1 = mkinsub("SFO")) + A1 = mkinsub("SFO"), quiet = TRUE) dfop_sfo_uba <- mkinmod(parent = mkinsub("DFOP", "A1"), - A1 = mkinsub("SFO")) + A1 = mkinsub("SFO"), quiet = TRUE) f_uba_mmkin <- mmkin(list("SFO-SFO" = sfo_sfo_uba, "DFOP-SFO" = dfop_sfo_uba), ds_uba, quiet = TRUE) f_uba_dfop_sfo_mixed <- mixed(f_uba_mmkin[2, ]) |