Make tests more platform independent, update docs

1 files changed, 63 insertions, 0 deletions

diff --git a/tests/testthat/summary_dfop_nlme_1.txt b/tests/testthat/summary_dfop_nlme_1.txt
new file mode 100644
index 00000000..9da3fb1b
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+++ b/tests/testthat/summary_dfop_nlme_1.txt
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+nlme version used for fitting:      Dummy 0.0 for testing 
+mkin version used for pre-fitting:  Dummy 0.0 for testing 
+R version used for fitting:         Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+           * parent
+
+Data:
+270 observations of 1 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical 
+
+Fitted in test time 0 s using 3 iterations
+
+Variance model: Constant variance 
+
+Mean of starting values for individual parameters:
+parent_0   log_k1   log_k2 g_qlogis 
+  100.06    -2.68    -4.16     0.01 
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+   AIC  BIC logLik
+  1242 1274   -612
+
+Optimised, transformed parameters with symmetric confidence intervals:
+         lower  est. upper
+parent_0  99.6 100.1 100.6
+log_k1    -2.9  -2.7  -2.4
+log_k2    -4.2  -4.1  -4.0
+g_qlogis  -0.7  -0.5  -0.2
+
+Correlation: 
+         pr_0 lg_1 lg_2
+log_k1    0.2          
+log_k2    0.1  0.2     
+g_qlogis -0.2 -0.5 -0.4
+
+Random effects:
+ Formula: list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
+ Level: ds
+ Structure: Diagonal
+        parent_0 log_k1 log_k2 g_qlogis Residual
+StdDev:      0.4    0.3    0.2      0.2        2
+
+
+Backtransformed parameters with asymmetric confidence intervals:
+         lower  est. upper
+parent_0 1e+02 1e+02 1e+02
+k1       6e-02 7e-02 9e-02
+k2       1e-02 2e-02 2e-02
+g        3e-01 4e-01 5e-01
+
+Estimated disappearance times:
+       DT50 DT90 DT50back DT50_k1 DT50_k2
+parent   23  111       33      10      42