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authorJohannes Ranke <jranke@uni-bremen.de>2022-02-08 17:17:29 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-02-08 17:17:29 +0100
commit0fa8a770812775d697717ad723f7f61fb04b7fef (patch)
tree17473ddf787541745d47dab063bc643ec59a9557 /tests/testthat/summary_nlme_biphasic_s.txt
parentd081384ddcb75a9f92fad33e4e3f6d6796f98e67 (diff)
parentc0638c84568d475b3b059e2c6e593e6f03b846bc (diff)
Merge branch 'nlmixr'
Diffstat (limited to 'tests/testthat/summary_nlme_biphasic_s.txt')
-rw-r--r--tests/testthat/summary_nlme_biphasic_s.txt46
1 files changed, 23 insertions, 23 deletions
diff --git a/tests/testthat/summary_nlme_biphasic_s.txt b/tests/testthat/summary_nlme_biphasic_s.txt
index 65aead62..86049775 100644
--- a/tests/testthat/summary_nlme_biphasic_s.txt
+++ b/tests/testthat/summary_nlme_biphasic_s.txt
@@ -13,19 +13,19 @@ d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
exp(-k2 * time))) * parent - k_m1 * m1
Data:
-509 observations of 2 variable(s) grouped in 15 datasets
+507 observations of 2 variable(s) grouped in 15 datasets
Model predictions using solution type analytical
-Fitted in test time 0 s using 3 iterations
+Fitted in test time 0 s using 4 iterations
Variance model: Constant variance
Mean of starting values for individual parameters:
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
- 100.70 -5.35 -0.08 -2.68 -4.37
+ 100.67 -5.38 -0.09 -2.74 -4.51
g_qlogis
- -0.33
+ -0.18
Fixed degradation parameter values:
value type
@@ -34,40 +34,40 @@ m1_0 0 state
Results:
AIC BIC logLik
- 2683 2738 -1329
+ 2678 2733 -1326
Optimised, transformed parameters with symmetric confidence intervals:
- lower est. upper
-parent_0 99.6 100.43 101.26
-log_k_m1 -5.5 -5.34 -5.18
-f_parent_qlogis -0.3 -0.08 0.09
-log_k1 -3.2 -2.90 -2.60
-log_k2 -4.6 -4.34 -4.07
-g_qlogis -0.5 -0.19 0.08
+ lower est. upper
+parent_0 99.8 100.7 101.62
+log_k_m1 -5.6 -5.4 -5.25
+f_parent_qlogis -0.3 -0.1 0.06
+log_k1 -3.0 -2.8 -2.57
+log_k2 -4.7 -4.5 -4.35
+g_qlogis -0.4 -0.1 0.17
Correlation:
prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-log_k_m1 -0.177
-f_parent_qlogis -0.164 0.385
-log_k1 0.108 -0.017 -0.025
-log_k2 0.036 0.054 0.008 0.096
-g_qlogis -0.068 -0.110 -0.030 -0.269 -0.267
+log_k_m1 -0.167
+f_parent_qlogis -0.145 0.380
+log_k1 0.170 0.005 -0.026
+log_k2 0.083 0.168 0.032 0.365
+g_qlogis -0.088 -0.170 -0.044 -0.472 -0.631
Random effects:
Formula: list(parent_0 ~ 1, log_k_m1 ~ 1, f_parent_qlogis ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
Level: ds
Structure: Diagonal
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 g_qlogis Residual
-StdDev: 1 0.1 0.3 0.6 0.5 0.3 3
+StdDev: 1 0.03 0.3 0.3 0.2 0.3 3
Backtransformed parameters with asymmetric confidence intervals:
lower est. upper
parent_0 1e+02 1e+02 1e+02
-k_m1 4e-03 5e-03 6e-03
+k_m1 4e-03 4e-03 5e-03
f_parent_to_m1 4e-01 5e-01 5e-01
-k1 4e-02 6e-02 7e-02
-k2 1e-02 1e-02 2e-02
+k1 5e-02 6e-02 8e-02
+k2 9e-03 1e-02 1e-02
g 4e-01 5e-01 5e-01
Resulting formation fractions:
@@ -77,5 +77,5 @@ parent_sink 0.5
Estimated disappearance times:
DT50 DT90 DT50back DT50_k1 DT50_k2
-parent 26 131 39 13 53
-m1 144 479 NA NA NA
+parent 25 150 45 11 63
+m1 154 512 NA NA NA

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