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authorJohannes Ranke <jranke@uni-bremen.de>2020-12-09 13:08:01 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-12-09 13:08:01 +0100
commit3b15daaf373ebc36da2eb92f2e37ed569731f07d (patch)
tree75339d1b69c30edf26251a48fedeee70b6069d82 /tests/testthat/summary_nlme_biphasic_s.txt
parentc6944440507b4b793a3715704122dfffb350a5a0 (diff)
More tests
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+nlme version used for fitting: Dummy 0.0 for testing
+mkin version used for pre-fitting: Dummy 0.0 for testing
+R version used for fitting: Dummy R version for testing
+Date of fit: Dummy date for testing
+Date of summary: Dummy date for testing
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+ * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+ exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+509 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical
+
+Fitted in test time 0 s using 2 iterations
+
+Variance model: Constant variance
+
+Mean of starting values for individual parameters:
+ parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
+ 100.700 -6.299 -0.078 -3.094 -3.954
+ g_qlogis
+ 0.027
+
+Fixed degradation parameter values:
+ value type
+m1_0 0 state
+
+Results:
+
+ AIC BIC logLik
+ 2711 2766 -1343
+
+Optimised, transformed parameters with symmetric confidence intervals:
+ lower est. upper
+parent_0 99.50 100.365 101.229
+log_k_m1 -6.53 -6.231 -5.936
+f_parent_qlogis -0.24 -0.078 0.084
+log_k1 -3.61 -3.224 -2.839
+log_k2 -4.52 -4.098 -3.677
+g_qlogis -0.38 -0.105 0.172
+
+Correlation:
+ prnt_0 lg_k_1 f_prn_ log_k1 log_k2
+log_k_m1 -0.185
+f_parent_qlogis -0.161 0.405
+log_k1 0.056 -0.014 -0.016
+log_k2 0.025 0.011 -0.004 0.026
+g_qlogis -0.032 -0.046 -0.012 -0.109 -0.103
+
+Random effects:
+ Formula: list(parent_0 ~ 1, log_k_m1 ~ 1, f_parent_qlogis ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
+ Level: ds
+ Structure: Diagonal
+ parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 g_qlogis Residual
+StdDev: 1.1 0.00017 0.28 0.74 0.82 0.28 2.7
+
+
+Backtransformed parameters with asymmetric confidence intervals:
+ lower est. upper
+parent_0 1.0e+02 100.365 1.0e+02
+k_m1 1.5e-03 0.002 2.6e-03
+f_parent_to_m1 4.4e-01 0.480 5.2e-01
+k1 2.7e-02 0.040 5.9e-02
+k2 1.1e-02 0.017 2.5e-02
+g 4.1e-01 0.474 5.4e-01
+
+Resulting formation fractions:
+ ff
+parent_m1 0.48
+parent_sink 0.52
+
+Estimated disappearance times:
+ DT50 DT90 DT50back DT50_k1 DT50_k2
+parent 27 105 31 17 42
+m1 352 1171 NA NA NA

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