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authorJohannes Ranke <jranke@uni-bremen.de>2022-03-01 11:23:49 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-03-01 11:52:03 +0100
commit2b331b5f9420943ebe26b60361578038ec560f88 (patch)
tree28d344e04730430ddc09ebb52365b3e5485d889e /tests/testthat/summary_nlmixr_saem_biphasic.txt
parentc013e35de82825786a12fa98a202219dd241257e (diff)
Add some more tests
Diffstat (limited to 'tests/testthat/summary_nlmixr_saem_biphasic.txt')
-rw-r--r--tests/testthat/summary_nlmixr_saem_biphasic.txt58
1 files changed, 29 insertions, 29 deletions
diff --git a/tests/testthat/summary_nlmixr_saem_biphasic.txt b/tests/testthat/summary_nlmixr_saem_biphasic.txt
index c5c1fe78..f1cdc47b 100644
--- a/tests/testthat/summary_nlmixr_saem_biphasic.txt
+++ b/tests/testthat/summary_nlmixr_saem_biphasic.txt
@@ -13,7 +13,7 @@ d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
exp(-k2 * time))) * parent - k_m1 * m1
Data:
-508 observations of 2 variable(s) grouped in 15 datasets
+507 observations of 2 variable(s) grouped in 15 datasets
Degradation model predictions using RxODE
@@ -23,9 +23,9 @@ Variance model: Constant variance
Mean of starting values for individual parameters:
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
- 100.74 -5.43 -0.05 -2.85 -4.57
+ 100.67 -5.38 -0.09 -2.74 -4.51
g_qlogis
- -0.15
+ -0.18
Mean of starting values for error model parameters:
sigma_parent sigma_m1
@@ -38,39 +38,39 @@ Results:
Likelihood calculated by gauss3_1.6
AIC BIC logLik
- 2465 2525 -1219
+ 2510 2569 -1241
Optimised parameters:
est. lower upper
-parent_0 100.54 99.7 101.40
-log_k_m1 -5.44 -5.6 -5.24
-f_parent_qlogis -0.06 -0.2 0.05
-log_k1 -2.81 -3.0 -2.65
-log_k2 -4.62 -4.8 -4.41
-g_qlogis -0.14 -0.4 0.17
+parent_0 100.49 99.6 101.37
+log_k_m1 -5.36 -5.5 -5.20
+f_parent_qlogis -0.09 -0.3 0.08
+log_k1 -2.78 -3.0 -2.59
+log_k2 -4.51 -4.7 -4.35
+g_qlogis -0.12 -0.5 0.21
Correlation:
- prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-log_k_m1 -0.224
-f_parent_qlogis -0.401 0.335
-log_k1 0.119 0.083 0.019
-log_k2 -0.019 0.237 0.142 0.395
-g_qlogis 0.083 -0.282 -0.218 -0.532 -0.544
+ pr_0 l__1 f_p_ lg_1 lg_2
+log_k_m1 -0.3
+f_parent_qlogis -0.2 0.3
+log_k1 0.1 0.1 0.0
+log_k2 0.0 0.3 0.1 0.4
+g_qlogis 0.0 -0.3 -0.1 -0.5 -0.7
Random effects (omega):
eta.parent_0 eta.log_k_m1 eta.f_parent_qlogis eta.log_k1
-eta.parent_0 0.05 0.0 0.00 0.00
-eta.log_k_m1 0.00 0.1 0.00 0.00
-eta.f_parent_qlogis 0.00 0.0 0.03 0.00
-eta.log_k1 0.00 0.0 0.00 0.05
-eta.log_k2 0.00 0.0 0.00 0.00
-eta.g_qlogis 0.00 0.0 0.00 0.00
+eta.parent_0 0.2 0.00 0.00 0.00
+eta.log_k_m1 0.0 0.05 0.00 0.00
+eta.f_parent_qlogis 0.0 0.00 0.09 0.00
+eta.log_k1 0.0 0.00 0.00 0.09
+eta.log_k2 0.0 0.00 0.00 0.00
+eta.g_qlogis 0.0 0.00 0.00 0.00
eta.log_k2 eta.g_qlogis
eta.parent_0 0.00 0.0
eta.log_k_m1 0.00 0.0
eta.f_parent_qlogis 0.00 0.0
eta.log_k1 0.00 0.0
-eta.log_k2 0.08 0.0
+eta.log_k2 0.03 0.0
eta.g_qlogis 0.00 0.1
Variance model:
@@ -80,11 +80,11 @@ sigma_parent sigma_m1
Backtransformed parameters:
est. lower upper
parent_0 1e+02 1e+02 1e+02
-k_m1 4e-03 4e-03 5e-03
-f_parent_to_m1 5e-01 5e-01 5e-01
+k_m1 5e-03 4e-03 6e-03
+f_parent_to_m1 5e-01 4e-01 5e-01
k1 6e-02 5e-02 7e-02
-k2 1e-02 8e-03 1e-02
-g 5e-01 4e-01 5e-01
+k2 1e-02 9e-03 1e-02
+g 5e-01 4e-01 6e-01
Resulting formation fractions:
ff
@@ -93,5 +93,5 @@ parent_sink 0.5
Estimated disappearance times:
DT50 DT90 DT50back DT50_k1 DT50_k2
-parent 27 170 51 12 70
-m1 160 532 NA NA NA
+parent 25 152 46 11 63
+m1 147 488 NA NA NA

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