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authorJohannes Ranke <jranke@uni-bremen.de>2022-02-28 20:46:39 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-02-28 20:46:39 +0100
commit931ca24a70995c78958140b1d53dfd52e0e9bc4d (patch)
treedce6df944e07cb427043c851d9addf4a545cf1fb /tests/testthat/summary_nlmixr_saem_biphasic.txt
parent9110b14f3cb40dbacbf78b8f7b3d9d212de6985b (diff)
Add test for summary.nlmixr.mmkin
Diffstat (limited to 'tests/testthat/summary_nlmixr_saem_biphasic.txt')
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+nlmixr version used for fitting: 2.0.6
+mkin version used for pre-fitting: Dummy 0.0 for testing
+R version used for fitting: Dummy R version for testing
+Date of fit: Dummy date for testing
+Date of summary: Dummy date for testing
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+ * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+ exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+508 observations of 2 variable(s) grouped in 15 datasets
+
+Degradation model predictions using RxODE
+
+Fitted in test time 0 s
+
+Variance model: Constant variance
+
+Mean of starting values for individual parameters:
+ parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
+ 100.74 -5.43 -0.05 -2.85 -4.57
+ g_qlogis
+ -0.15
+
+Mean of starting values for error model parameters:
+sigma_parent sigma_m1
+ 3 3
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood calculated by gauss3_1.6
+ AIC BIC logLik
+ 2465 2525 -1219
+
+Optimised parameters:
+ est. lower upper
+parent_0 100.54 99.7 101.40
+log_k_m1 -5.44 -5.6 -5.24
+f_parent_qlogis -0.06 -0.2 0.05
+log_k1 -2.81 -3.0 -2.65
+log_k2 -4.62 -4.8 -4.41
+g_qlogis -0.14 -0.4 0.17
+
+Correlation:
+ prnt_0 lg_k_1 f_prn_ log_k1 log_k2
+log_k_m1 -0.224
+f_parent_qlogis -0.401 0.335
+log_k1 0.119 0.083 0.019
+log_k2 -0.019 0.237 0.142 0.395
+g_qlogis 0.083 -0.282 -0.218 -0.532 -0.544
+
+Random effects (omega):
+ eta.parent_0 eta.log_k_m1 eta.f_parent_qlogis eta.log_k1
+eta.parent_0 0.05 0.0 0.00 0.00
+eta.log_k_m1 0.00 0.1 0.00 0.00
+eta.f_parent_qlogis 0.00 0.0 0.03 0.00
+eta.log_k1 0.00 0.0 0.00 0.05
+eta.log_k2 0.00 0.0 0.00 0.00
+eta.g_qlogis 0.00 0.0 0.00 0.00
+ eta.log_k2 eta.g_qlogis
+eta.parent_0 0.00 0.0
+eta.log_k_m1 0.00 0.0
+eta.f_parent_qlogis 0.00 0.0
+eta.log_k1 0.00 0.0
+eta.log_k2 0.08 0.0
+eta.g_qlogis 0.00 0.1
+
+Variance model:
+sigma_parent sigma_m1
+ 4 1
+
+Backtransformed parameters:
+ est. lower upper
+parent_0 1e+02 1e+02 1e+02
+k_m1 4e-03 4e-03 5e-03
+f_parent_to_m1 5e-01 5e-01 5e-01
+k1 6e-02 5e-02 7e-02
+k2 1e-02 8e-03 1e-02
+g 5e-01 4e-01 5e-01
+
+Resulting formation fractions:
+ ff
+parent_m1 0.5
+parent_sink 0.5
+
+Estimated disappearance times:
+ DT50 DT90 DT50back DT50_k1 DT50_k2
+parent 27 170 51 12 70
+m1 160 532 NA NA NA

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