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| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-03-01 11:23:49 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-03-01 11:52:03 +0100 |
| commit | 2b331b5f9420943ebe26b60361578038ec560f88 (patch) | |
| tree | 28d344e04730430ddc09ebb52365b3e5485d889e /tests/testthat/summary_nlmixr_saem_biphasic.txt | |
| parent | c013e35de82825786a12fa98a202219dd241257e (diff) | |
Add some more tests
Diffstat (limited to 'tests/testthat/summary_nlmixr_saem_biphasic.txt')
| -rw-r--r-- | tests/testthat/summary_nlmixr_saem_biphasic.txt | 58 |
1 files changed, 29 insertions, 29 deletions
diff --git a/tests/testthat/summary_nlmixr_saem_biphasic.txt b/tests/testthat/summary_nlmixr_saem_biphasic.txt index c5c1fe78..f1cdc47b 100644 --- a/tests/testthat/summary_nlmixr_saem_biphasic.txt +++ b/tests/testthat/summary_nlmixr_saem_biphasic.txt @@ -13,7 +13,7 @@ d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g) exp(-k2 * time))) * parent - k_m1 * m1 Data: -508 observations of 2 variable(s) grouped in 15 datasets +507 observations of 2 variable(s) grouped in 15 datasets Degradation model predictions using RxODE @@ -23,9 +23,9 @@ Variance model: Constant variance Mean of starting values for individual parameters: parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 - 100.74 -5.43 -0.05 -2.85 -4.57 + 100.67 -5.38 -0.09 -2.74 -4.51 g_qlogis - -0.15 + -0.18 Mean of starting values for error model parameters: sigma_parent sigma_m1 @@ -38,39 +38,39 @@ Results: Likelihood calculated by gauss3_1.6 AIC BIC logLik - 2465 2525 -1219 + 2510 2569 -1241 Optimised parameters: est. lower upper -parent_0 100.54 99.7 101.40 -log_k_m1 -5.44 -5.6 -5.24 -f_parent_qlogis -0.06 -0.2 0.05 -log_k1 -2.81 -3.0 -2.65 -log_k2 -4.62 -4.8 -4.41 -g_qlogis -0.14 -0.4 0.17 +parent_0 100.49 99.6 101.37 +log_k_m1 -5.36 -5.5 -5.20 +f_parent_qlogis -0.09 -0.3 0.08 +log_k1 -2.78 -3.0 -2.59 +log_k2 -4.51 -4.7 -4.35 +g_qlogis -0.12 -0.5 0.21 Correlation: - prnt_0 lg_k_1 f_prn_ log_k1 log_k2 -log_k_m1 -0.224 -f_parent_qlogis -0.401 0.335 -log_k1 0.119 0.083 0.019 -log_k2 -0.019 0.237 0.142 0.395 -g_qlogis 0.083 -0.282 -0.218 -0.532 -0.544 + pr_0 l__1 f_p_ lg_1 lg_2 +log_k_m1 -0.3 +f_parent_qlogis -0.2 0.3 +log_k1 0.1 0.1 0.0 +log_k2 0.0 0.3 0.1 0.4 +g_qlogis 0.0 -0.3 -0.1 -0.5 -0.7 Random effects (omega): eta.parent_0 eta.log_k_m1 eta.f_parent_qlogis eta.log_k1 -eta.parent_0 0.05 0.0 0.00 0.00 -eta.log_k_m1 0.00 0.1 0.00 0.00 -eta.f_parent_qlogis 0.00 0.0 0.03 0.00 -eta.log_k1 0.00 0.0 0.00 0.05 -eta.log_k2 0.00 0.0 0.00 0.00 -eta.g_qlogis 0.00 0.0 0.00 0.00 +eta.parent_0 0.2 0.00 0.00 0.00 +eta.log_k_m1 0.0 0.05 0.00 0.00 +eta.f_parent_qlogis 0.0 0.00 0.09 0.00 +eta.log_k1 0.0 0.00 0.00 0.09 +eta.log_k2 0.0 0.00 0.00 0.00 +eta.g_qlogis 0.0 0.00 0.00 0.00 eta.log_k2 eta.g_qlogis eta.parent_0 0.00 0.0 eta.log_k_m1 0.00 0.0 eta.f_parent_qlogis 0.00 0.0 eta.log_k1 0.00 0.0 -eta.log_k2 0.08 0.0 +eta.log_k2 0.03 0.0 eta.g_qlogis 0.00 0.1 Variance model: @@ -80,11 +80,11 @@ sigma_parent sigma_m1 Backtransformed parameters: est. lower upper parent_0 1e+02 1e+02 1e+02 -k_m1 4e-03 4e-03 5e-03 -f_parent_to_m1 5e-01 5e-01 5e-01 +k_m1 5e-03 4e-03 6e-03 +f_parent_to_m1 5e-01 4e-01 5e-01 k1 6e-02 5e-02 7e-02 -k2 1e-02 8e-03 1e-02 -g 5e-01 4e-01 5e-01 +k2 1e-02 9e-03 1e-02 +g 5e-01 4e-01 6e-01 Resulting formation fractions: ff @@ -93,5 +93,5 @@ parent_sink 0.5 Estimated disappearance times: DT50 DT90 DT50back DT50_k1 DT50_k2 -parent 27 170 51 12 70 -m1 160 532 NA NA NA +parent 25 152 46 11 63 +m1 147 488 NA NA NA |