Remove nlmixr interface for release of mkin 1.1.0

I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.

For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).

1 files changed, 0 insertions, 97 deletions

diff --git a/tests/testthat/summary_nlmixr_saem_biphasic.txt b/tests/testthat/summary_nlmixr_saem_biphasic.txt
deleted file mode 100644
index 144cbac7..00000000
--- a/tests/testthat/summary_nlmixr_saem_biphasic.txt
+++ /dev/null
@@ -1,97 +0,0 @@
-nlmixr version used for fitting:    2.0.6 
-mkin version used for pre-fitting:  Dummy 0.0 for testing 
-R version used for fitting:         Dummy R version for testing 
-Date of fit:     Dummy date for testing 
-Date of summary: Dummy date for testing 
-
-Equations:
-d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
-           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
-           * parent
-d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
-           * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
-           exp(-k2 * time))) * parent - k_m1 * m1
-
-Data:
-507 observations of 2 variable(s) grouped in 15 datasets
-
-Degradation model predictions using RxODE
-
-Fitted in test time 0 s
-
-Variance model: Two-component variance function 
-
-Mean of starting values for individual parameters:
-       parent_0        log_k_m1 f_parent_qlogis          log_k1          log_k2 
-         100.65           -5.38           -0.09           -2.74           -4.53 
-       g_qlogis 
-          -0.14 
-
-Mean of starting values for error model parameters:
-sigma_low_parent  rsd_high_parent     sigma_low_m1      rsd_high_m1 
-            0.79             0.05             0.79             0.05 
-
-Fixed degradation parameter values:
-None
-
-Results:
-
-Likelihood calculated by gauss3_1.6  
-   AIC  BIC logLik
-  2400 2468  -1184
-
-Optimised parameters:
-                  est. lower upper
-parent_0        100.35  99.0 101.7
-log_k_m1         -5.35  -5.5  -5.2
-f_parent_qlogis  -0.09  -0.3   0.1
-log_k1           -2.76  -3.0  -2.6
-log_k2           -4.49  -4.6  -4.4
-g_qlogis         -0.17  -0.4   0.1
-
-Correlation: 
-                pr_0 l__1 f_p_ lg_1 lg_2
-log_k_m1        -0.4                    
-f_parent_qlogis -0.4  0.4               
-log_k1           0.2 -0.2 -0.1          
-log_k2           0.0  0.1  0.0  0.3     
-g_qlogis         0.1 -0.1  0.0 -0.4 -0.5
-
-Random effects (omega):
-                    eta.parent_0 eta.log_k_m1 eta.f_parent_qlogis eta.log_k1
-eta.parent_0                0.08         0.00                 0.0       0.00
-eta.log_k_m1                0.00         0.02                 0.0       0.00
-eta.f_parent_qlogis         0.00         0.00                 0.1       0.00
-eta.log_k1                  0.00         0.00                 0.0       0.09
-eta.log_k2                  0.00         0.00                 0.0       0.00
-eta.g_qlogis                0.00         0.00                 0.0       0.00
-                    eta.log_k2 eta.g_qlogis
-eta.parent_0              0.00          0.0
-eta.log_k_m1              0.00          0.0
-eta.f_parent_qlogis       0.00          0.0
-eta.log_k1                0.00          0.0
-eta.log_k2                0.03          0.0
-eta.g_qlogis              0.00          0.1
-
-Variance model:
-sigma_low_parent  rsd_high_parent     sigma_low_m1      rsd_high_m1 
-            1.04             0.05             0.82             0.06 
-
-Backtransformed parameters:
-                est. lower upper
-parent_0       1e+02 1e+02 1e+02
-k_m1           5e-03 4e-03 6e-03
-f_parent_to_m1 5e-01 4e-01 5e-01
-k1             6e-02 5e-02 8e-02
-k2             1e-02 1e-02 1e-02
-g              5e-01 4e-01 5e-01
-
-Resulting formation fractions:
-             ff
-parent_m1   0.5
-parent_sink 0.5
-
-Estimated disappearance times:
-       DT50 DT90 DT50back DT50_k1 DT50_k2
-parent   25  150       45      11      61
-m1      145  483       NA      NA      NA