Merge branch 'nlmixr'

1 files changed, 77 insertions, 0 deletions

diff --git a/tests/testthat/summary_saem_biphasic_s.txt b/tests/testthat/summary_saem_biphasic_s.txt
new file mode 100644
index 00000000..bab4bf98
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+++ b/tests/testthat/summary_saem_biphasic_s.txt
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+saemix version used for fitting:      Dummy 0.0 for testing 
+mkin version used for pre-fitting:  Dummy 0.0 for testing 
+R version used for fitting:         Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+           * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+           * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+           exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+507 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical 
+
+Fitted in test time 0 s using 300, 100 iterations
+
+Variance model: Constant variance 
+
+Mean of starting values for individual parameters:
+      parent_0           k_m1 f_parent_to_m1             k1             k2 
+       1.0e+02        4.6e-03        4.8e-01        6.4e-02        1.1e-02 
+             g 
+       4.6e-01 
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood computed by importance sampling
+   AIC  BIC logLik
+  2679 2689  -1327
+
+Optimised parameters:
+                  est.   lower   upper
+parent_0       1.0e+02 1.0e+02 1.0e+02
+k_m1           4.8e-03 4.1e-03 5.5e-03
+f_parent_to_m1 4.8e-01 4.3e-01 5.2e-01
+k1             5.9e-02 4.6e-02 7.2e-02
+k2             1.1e-02 9.0e-03 1.3e-02
+g              4.9e-01 4.3e-01 5.4e-01
+
+Correlation: 
+               prnt_0 k_m1   f_p__1 k1     k2    
+k_m1           -0.168                            
+f_parent_to_m1 -0.141  0.379                     
+k1              0.139 -0.004 -0.024              
+k2              0.055  0.154  0.033  0.246       
+g              -0.078 -0.206 -0.058 -0.435 -0.601
+
+Random effects:
+                    est. lower upper
+SD.parent_0       1.1986  0.28  2.12
+SD.k_m1           0.0034 -6.85  6.86
+SD.f_parent_to_m1 0.3369  0.21  0.46
+SD.k1             0.3790  0.24  0.52
+SD.k2             0.2666  0.16  0.37
+SD.g              0.0401 -0.67  0.75
+
+Variance model:
+    est. lower upper
+a.1  2.9   2.7     3
+
+Resulting formation fractions:
+              ff
+parent_m1   0.48
+parent_sink 0.52
+
+Estimated disappearance times:
+       DT50 DT90 DT50back DT50_k1 DT50_k2
+parent   25  150       45      12      64
+m1      145  483       NA      NA      NA