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authorJohannes Ranke <jranke@uni-bremen.de>2021-02-06 18:30:32 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-02-06 18:30:32 +0100
commit48c463680b51fa767b4cd7bd62865f192d0354ac (patch)
tree5b66eb08a7fd5e29fb7e6d3a9a8258ccdcaea73e /tests/testthat/summary_saem_biphasic_s.txt
parent2ee20b257e34210e2d1f044431f3bfe059c9c5e7 (diff)
Reintroduce interface to saemix
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
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+saemix version used for fitting: Dummy 0.0 for testing
+mkin version used for pre-fitting: Dummy 0.0 for testing
+R version used for fitting: Dummy R version for testing
+Date of fit: Dummy date for testing
+Date of summary: Dummy date for testing
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+ * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+ exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+509 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical
+
+Fitted in test time 0 s using 300, 100 iterations
+
+Variance model: Constant variance
+
+Mean of starting values for individual parameters:
+ parent_0 k_m1 f_parent_to_m1 k1 k2
+ 1.0e+02 4.8e-03 4.8e-01 6.8e-02 1.3e-02
+ g
+ 4.2e-01
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood computed by importance sampling
+ AIC BIC logLik
+ 2645 2654 -1310
+
+Optimised parameters:
+ est. lower upper
+parent_0 1.0e+02 99.627 1.0e+02
+k_m1 4.8e-03 0.004 5.6e-03
+f_parent_to_m1 4.8e-01 0.437 5.2e-01
+k1 6.5e-02 0.051 8.0e-02
+k2 1.2e-02 0.010 1.4e-02
+g 4.3e-01 0.362 5.0e-01
+
+Correlation:
+ prnt_0 k_m1 f_p__1 k1 k2
+k_m1 -0.156
+f_parent_to_m1 -0.157 0.372
+k1 0.159 0.000 -0.029
+k2 0.074 0.145 0.032 0.332
+g -0.072 -0.142 -0.044 -0.422 -0.570
+
+Random effects:
+ est. lower upper
+SD.parent_0 1.14 0.251 2.03
+SD.k_m1 0.14 -0.073 0.35
+SD.f_parent_to_m1 0.29 0.176 0.41
+SD.k1 0.36 0.211 0.52
+SD.k2 0.18 0.089 0.27
+SD.g 0.32 0.098 0.53
+
+Variance model:
+ est. lower upper
+a.1 2.7 2.5 2.9
+
+Resulting formation fractions:
+ ff
+parent_m1 0.48
+parent_sink 0.52
+
+Estimated disappearance times:
+ DT50 DT90 DT50back DT50_k1 DT50_k2
+parent 25 145 44 11 58
+m1 145 481 NA NA NA

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