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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-18 19:14:47 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-18 19:14:47 +0100
commit5364f037a72863ef5ba81e14ba4417f68fd389f9 (patch)
treefac84908a74553009b0ab03d7a8c21cdf3a7f086 /tests/testthat/summary_saem_dfop_sfo_s.txt
parenta14237fc1580b09f8772cd3330b0a445785e48ac (diff)
Make mixed model test data permanent to ensure reproducibility
To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package.
Diffstat (limited to 'tests/testthat/summary_saem_dfop_sfo_s.txt')
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diff --git a/tests/testthat/summary_saem_dfop_sfo_s.txt b/tests/testthat/summary_saem_dfop_sfo_s.txt
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+saemix version used for fitting: Dummy 0.0 for testing
+mkin version used for pre-fitting: Dummy 0.0 for testing
+R version used for fitting: Dummy R version for testing
+Date of fit: Dummy date for testing
+Date of summary: Dummy date for testing
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+ * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+ exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+510 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical
+
+Fitted in test time 0 s
+Using 300, 100 iterations and 4 chains
+
+Variance model: Two-component variance function
+
+Mean of starting values for individual parameters:
+ parent_0 k_m1 f_parent_to_m1 k1 k2
+ 1e+02 7e-03 5e-01 1e-01 2e-02
+ g
+ 5e-01
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood computed by importance sampling
+ AIC BIC logLik
+ 2334 2344 -1153
+
+Optimised parameters:
+ est. lower upper
+parent_0 1e+02 1e+02 1e+02
+k_m1 7e-03 6e-03 7e-03
+f_parent_to_m1 5e-01 4e-01 5e-01
+k1 1e-01 9e-02 1e-01
+k2 2e-02 2e-02 3e-02
+g 5e-01 5e-01 5e-01
+a.1 9e-01 8e-01 1e+00
+b.1 5e-02 5e-02 6e-02
+SD.parent_0 3e-02 -5e+01 5e+01
+SD.k_m1 2e-01 1e-01 3e-01
+SD.f_parent_to_m1 3e-01 2e-01 4e-01
+SD.k1 4e-01 2e-01 5e-01
+SD.k2 3e-01 2e-01 5e-01
+SD.g 2e-01 6e-02 4e-01
+
+Correlation:
+ pr_0 k_m1 f___ k1 k2
+k_m1 -0.2
+f_parent_to_m1 -0.3 0.1
+k1 0.1 0.0 0.0
+k2 0.0 0.0 0.0 0.1
+g 0.1 -0.1 0.0 -0.2 -0.2
+
+Random effects:
+ est. lower upper
+SD.parent_0 0.03 -49.24 49.3
+SD.k_m1 0.23 0.13 0.3
+SD.f_parent_to_m1 0.30 0.19 0.4
+SD.k1 0.40 0.25 0.5
+SD.k2 0.34 0.21 0.5
+SD.g 0.21 0.06 0.4
+
+Variance model:
+ est. lower upper
+a.1 0.93 0.79 1.06
+b.1 0.05 0.05 0.06
+
+Resulting formation fractions:
+ ff
+parent_m1 0.5
+parent_sink 0.5
+
+Estimated disappearance times:
+ DT50 DT90 DT50back DT50_k1 DT50_k2
+parent 13 73 22 6 32
+m1 105 348 NA NA NA

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