Merge branch 'main' into custom_lsoda_call

1 files changed, 100 insertions, 0 deletions

diff --git a/tests/testthat/summary_saem_dfop_sfo_s.txt b/tests/testthat/summary_saem_dfop_sfo_s.txt
new file mode 100644
index 00000000..6468ff17
--- /dev/null
+++ b/tests/testthat/summary_saem_dfop_sfo_s.txt
@@ -0,0 +1,100 @@
+saemix version used for fitting:      Dummy 0.0 for testing 
+mkin version used for pre-fitting:  Dummy 0.0 for testing 
+R version used for fitting:         Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+           * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+           * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+           exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+510 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical 
+
+Fitted in test time 0 s
+Using 300, 100 iterations and 4 chains
+
+Variance model: Two-component variance function 
+
+Starting values for degradation parameters:
+      parent_0           k_m1 f_parent_to_m1             k1             k2 
+         1e+02          7e-03          5e-01          1e-01          2e-02 
+             g 
+         5e-01 
+
+Fixed degradation parameter values:
+None
+
+Starting values for random effects (square root of initial entries in omega):
+               parent_0 k_m1 f_parent_to_m1 k1 k2 g
+parent_0            101    0              0  0  0 0
+k_m1                  0    1              0  0  0 0
+f_parent_to_m1        0    0              1  0  0 0
+k1                    0    0              0  1  0 0
+k2                    0    0              0  0  1 0
+g                     0    0              0  0  0 1
+
+Starting values for error model parameters:
+a.1 b.1 
+  1   1 
+
+Results:
+
+Likelihood computed by importance sampling
+   AIC  BIC logLik
+  2334 2344  -1153
+
+Optimised parameters:
+                   est.  lower upper
+parent_0          1e+02  1e+02 1e+02
+k_m1              7e-03  6e-03 7e-03
+f_parent_to_m1    5e-01  4e-01 5e-01
+k1                1e-01  9e-02 1e-01
+k2                2e-02  2e-02 3e-02
+g                 5e-01  5e-01 5e-01
+a.1               9e-01  8e-01 1e+00
+b.1               5e-02  5e-02 6e-02
+SD.parent_0       3e-02 -5e+01 5e+01
+SD.k_m1           2e-01  1e-01 3e-01
+SD.f_parent_to_m1 3e-01  2e-01 4e-01
+SD.k1             4e-01  2e-01 5e-01
+SD.k2             3e-01  2e-01 5e-01
+SD.g              2e-01  6e-02 4e-01
+
+Correlation: 
+               pr_0 k_m1 f___ k1   k2  
+k_m1           -0.2                    
+f_parent_to_m1 -0.3  0.1               
+k1              0.1  0.0  0.0          
+k2              0.0  0.0  0.0  0.1     
+g               0.1 -0.1  0.0 -0.2 -0.2
+
+Random effects:
+                  est.  lower upper
+SD.parent_0       0.03 -49.24  49.3
+SD.k_m1           0.23   0.13   0.3
+SD.f_parent_to_m1 0.30   0.19   0.4
+SD.k1             0.40   0.25   0.5
+SD.k2             0.34   0.21   0.5
+SD.g              0.21   0.06   0.4
+
+Variance model:
+    est. lower upper
+a.1 0.93  0.79  1.06
+b.1 0.05  0.05  0.06
+
+Resulting formation fractions:
+             ff
+parent_m1   0.5
+parent_sink 0.5
+
+Estimated disappearance times:
+       DT50 DT90 DT50back DT50_k1 DT50_k2
+parent   13   73       22       6      32
+m1      105  348       NA      NA      NA