Test CAKE export

1 files changed, 51 insertions, 0 deletions

diff --git a/tests/testthat/test_CAKE_export.R b/tests/testthat/test_CAKE_export.R
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+# Copyright (C) 2019 Johannes Ranke
+# Contact: jranke@uni-bremen.de
+
+# This file is part of the R package mkin
+
+# mkin is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+# details.
+
+# You should have received a copy of the GNU General Public License along with
+# this program. If not, see <http://www.gnu.org/licenses/>
+
+context("Export dataset for reading into CAKE")
+
+test_that("Exporting is reproducible", {
+  CAKE_export(list("FOCUS C" = FOCUS_2006_C,
+                   "FOCUS D" = FOCUS_2006_D),
+    map = c(parent = "Parent", m1 = "M1"),
+    filename = "FOCUS_2006_D.csf", overwrite = TRUE, 
+    study = "FOCUS 2006 D")
+  csf <- readLines(con = "FOCUS_2006_D.csf")
+  expect_known_output(csf, "FOCUS_2006_D.txt")
+})
+
+test_that("Test data from Appendix D are correctly evaluated", {
+  expect_message(res <- nafta(MRID_555555, "MRID 555555"))
+
+  # From Figure D.1
+  dtx_sop <- matrix(c(407, 541, 429, 1352, 5192066, 2383), nrow = 3, ncol = 2)
+  expect_equivalent(res$distimes[, 1:2], dtx_sop, tolerance = 1,
+                    scale = 1)
+
+  C0_sop <- c(SFO = 83.8, IORE = 96.9, DFOP = 97.6)
+  C0_mkin <- sapply(res$parameters, function(x) x["parent_0", "Estimate"])
+  expect_equivalent(C0_mkin, C0_sop, scale = 1, tolerance = 0.1)
+
+  expect_equal(round(res$S_c), 717)
+  expect_equal(signif(res$S[["SFO"]], 3), 1.38e+3)
+  expect_equal(round(res$t_rep), 841)
+
+  expect_known_output(print(res), "print_nafta_analysis.txt")
+
+  plot_nafta <- function() plot(res)
+  vdiffr::expect_doppelganger("Plot NAFTA analysis", plot_nafta)
+})