diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-18 08:37:40 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-18 08:37:40 +0100 |
| commit | df0cff4b829f1abf62f037591a24a8019174dd0a (patch) | |
| tree | c43c58070ea2fd122e54e11b938bf7b71bf9fa3e /tests/testthat/test_multistart.R | |
| parent | 1ba099d12ece70f77737505c41eaa7fd1c701140 (diff) | |
Pass error.init to saemix_model, show in parplot
Due to an oversight, error.init was not really passed to saemix_model in
saem.mmkin. The new initial values were reverted to c(1, 1), in order to
avoid changing the test results. Initial values for error model
parameters are now shown in parplot.multistart.
Diffstat (limited to 'tests/testthat/test_multistart.R')
| -rw-r--r-- | tests/testthat/test_multistart.R | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tests/testthat/test_multistart.R b/tests/testthat/test_multistart.R index 98d3fb6d..502cee98 100644 --- a/tests/testthat/test_multistart.R +++ b/tests/testthat/test_multistart.R @@ -3,16 +3,16 @@ context("Multistart method for saem.mmkin models") test_that("multistart works for saem.mmkin models", { skip_on_cran() # Save CRAN time set.seed(123456) - saem_sfo_s_multi <- multistart(sfo_saem_1_reduced, n = 8, cores = n_cores, - no_random_effect = "parent_0") + saem_sfo_s_multi <- multistart(sfo_saem_1_reduced, n = 8, cores = n_cores) anova_sfo <- anova(sfo_saem_1, sfo_saem_1_reduced, best(saem_sfo_s_multi), test = TRUE ) # On winbuilder, sfo_saem_1 gives an AIC of 1310.8, while we get 1311.7 - # locally on Linux and Windows. The other, well-determined fits - # both give 1309.7 + # locally (using saemix 3.2, which likely makes the difference due to the + # error parameter patch) on Linux and Windows. The other, well-determined + # fits both give 1309.7. expect_equal(round(anova_sfo, 1)["sfo_saem_1_reduced", "AIC"], 1309.7) expect_equal(round(anova_sfo, 1)["best(saem_sfo_s_multi)", "AIC"], 1309.7) expect_true(anova_sfo[3, "Pr(>Chisq)"] > 0.2) # Local: 1, CRAN: 0.4 |