diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-11-01 12:19:03 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-11-01 12:19:03 +0100 |
| commit | bbb74d4f60033899cd5cdd36aa70f157bc52209e (patch) | |
| tree | ca0f620ba0ffd59ff242071260d2346e4ca254ff /tests/testthat | |
| parent | 70e48e8360875f22970174d409c46cb3f076fa99 (diff) | |
Fix bug in yesterdays release, add methods for BIC
Diffstat (limited to 'tests/testthat')
| -rw-r--r-- | tests/testthat/FOCUS_2006_D.csf | 2 | ||||
| -rw-r--r-- | tests/testthat/test_error_models.R | 8 | ||||
| -rw-r--r-- | tests/testthat/test_plots_summary_twa.R | 3 |
3 files changed, 11 insertions, 2 deletions
diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf index 942d56e1..a28aafec 100644 --- a/tests/testthat/FOCUS_2006_D.csf +++ b/tests/testthat/FOCUS_2006_D.csf @@ -5,7 +5,7 @@ Description: MeasurementUnits: % AR TimeUnits: days Comments: Created using mkin::CAKE_export -Date: 2019-10-31 +Date: 2019-11-01 Optimiser: IRLS [Data] diff --git a/tests/testthat/test_error_models.R b/tests/testthat/test_error_models.R index 12a8b7e5..83cff2e5 100644 --- a/tests/testthat/test_error_models.R +++ b/tests/testthat/test_error_models.R @@ -36,30 +36,36 @@ test_that("The different error model fitting methods work for parent fits", { f_9_OLS <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, quiet = TRUE) expect_equivalent(round(AIC(f_9_OLS), 2), 137.43) + f_9_parms_const <- parms(f_9_OLS) f_9_direct <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "direct", quiet = TRUE) expect_equivalent(round(AIC(f_9_direct), 2), 134.94) + f_9_parms_tc_direct <- parms(f_9_direct) f_9_twostep <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "twostep", quiet = TRUE) - expect_equivalent(round(AIC(f_9_twostep), 2), 134.94) + expect_equivalent(parms(f_9_twostep), f_9_parms_tc_direct) f_9_threestep <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "threestep", quiet = TRUE) expect_equivalent(round(AIC(f_9_threestep), 2), 139.43) + expect_equivalent(parms(f_9_threestep)[1:3], f_9_parms_const) f_9_fourstep <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "fourstep", quiet = TRUE) expect_equivalent(round(AIC(f_9_fourstep), 2), 139.43) + expect_equivalent(parms(f_9_fourstep)[1:3], f_9_parms_const) f_9_IRLS <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "IRLS", quiet = TRUE) expect_equivalent(round(AIC(f_9_IRLS), 2), 139.43) + expect_equivalent(parms(f_9_IRLS)[1:3], f_9_parms_const) f_9_d_3 <- mkinfit("SFO", experimental_data_for_UBA_2019[[9]]$data, error_model = "tc", error_model_algorithm = "d_3", quiet = TRUE) expect_equivalent(round(AIC(f_9_d_3), 2), 134.94) + expect_equivalent(parms(f_9_d_3), f_9_parms_tc_direct) }) test_that("The default error model algorithm finds the best known AIC values for parent fits", { diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R index 28c569b6..5917dd6e 100644 --- a/tests/testthat/test_plots_summary_twa.R +++ b/tests/testthat/test_plots_summary_twa.R @@ -126,4 +126,7 @@ test_that("The AIC is reproducible", { data.frame(df = c(3, 4, 5, 5), AIC = c(59.3, 44.7, 29.0, 39.2)), scale = 1, tolerance = 0.1) expect_error(AIC(fits["SFO", ]), "column object") + expect_equivalent(BIC(fits[, "FOCUS_C"]), + data.frame(df = c(3, 4, 5, 5), AIC = c(59.9, 45.5, 30.0, 40.2)), + scale = 1, tolerance = 0.1) }) |