Initial upload of the upcoming multicompartment version of kinfit.

Some functionality is still missing (chi2), some may never be implemented
(FOMC model), but in general it is much more powerful than kinfit, owing
to the powerful FME package.



git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@8 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

1 files changed, 58 insertions, 0 deletions

diff --git a/tests/doRUnit.R b/tests/doRUnit.R
new file mode 100644
index 00000000..e2ad4cd2
--- /dev/null
+++ b/tests/doRUnit.R
@@ -0,0 +1,58 @@
+if(require("RUnit", quietly=TRUE)) {
+ 
+  ## --- Setup ---
+ 
+  pkg <- "mkin" # <-- Change to package name!
+  if(Sys.getenv("RCMDCHECK") == "FALSE") {
+    ## Path to unit tests for standalone running under Makefile (not R CMD check)
+    ## PKG/tests/../inst/unitTests
+    path <- file.path(getwd(), "..", "inst", "unitTests")
+  } else {
+    ## Path to unit tests for R CMD check
+    ## PKG.Rcheck/tests/../PKG/unitTests
+    path <- system.file(package=pkg, "unitTests")
+  }
+  cat("\nRunning unit tests\n")
+  print(list(pkg=pkg, getwd=getwd(), pathToUnitTests=path))
+ 
+  library(package=pkg, character.only=TRUE)
+ 
+  ## If desired, load the name space to allow testing of private functions
+  ## if (is.element(pkg, loadedNamespaces()))
+  ##     attach(loadNamespace(pkg), name=paste("namespace", pkg, sep=":"), pos=3)
+  ##
+  ## or simply call PKG:::myPrivateFunction() in tests
+ 
+  ## --- Testing ---
+ 
+  ## Define tests
+  testSuite <- defineTestSuite(name=paste(pkg, " Unit Tests"),
+                                          dirs=path)
+  ## Run
+  tests <- runTestSuite(testSuite)
+ 
+  ## Default report name
+  pathReport <- file.path(path, "report")
+ 
+  ## Report to stdout and text files
+  cat("------------------- UNIT TEST SUMMARY ---------------------\n\n")
+  printTextProtocol(tests, showDetails=FALSE)
+  printTextProtocol(tests, showDetails=FALSE,
+                    fileName=paste(pathReport, "Summary.txt", sep=""))
+  printTextProtocol(tests, showDetails=TRUE,
+                    fileName=paste(pathReport, ".txt", sep=""))
+ 
+  ## Report to HTML file
+  printHTMLProtocol(tests, fileName=paste(pathReport, ".html", sep=""))
+ 
+  ## Return stop() to cause R CMD check stop in case of
+  ##  - failures i.e. FALSE to unit tests or
+  ##  - errors i.e. R errors
+  tmp <- getErrors(tests)
+  if(tmp$nFail > 0 | tmp$nErr > 0) {
+    stop(paste("\n\nunit testing failed (#test failures: ", tmp$nFail,
+               ", #R errors: ",  tmp$nErr, ")\n\n", sep=""))
+  }
+} else {
+  warning("cannot run unit tests -- package RUnit is not available")
+}