Version bump, correct benchmark in vignette/compiled_models

Reorganisation of the vignette generation in the Makefile.
Improved YAML header in the R markdown vignettes.
Rebuilt vignettes with the package installed.

1 files changed, 14 insertions, 7 deletions

diff --git a/vignettes/FOCUS_D.Rmd b/vignettes/FOCUS_D.Rmd
index 8ae73c16..ec0c9040 100644
--- a/vignettes/FOCUS_D.Rmd
+++ b/vignettes/FOCUS_D.Rmd
@@ -1,14 +1,21 @@
-<!--

-%\VignetteEngine{knitr::knitr}

-%\VignetteIndexEntry{Simple Evaluation of FOCUS Example Dataset D}

--->

+---

+title: "`r (vignette_title <- 'Example evaluation of FOCUS Example Dataset D')`"

+author: "Johannes Ranke"

+date: "`r Sys.Date()`"

+output:

+  html_document:

+    mathjax: null

+    theme: united

+vignette: >

+  %\VignetteIndexEntry{`r vignette_title`}

+  %\VignetteEngine{knitr::rmarkdown}

+  \usepackage[utf8]{inputenc}

+---

 

 ```{r, include = FALSE}

 library(knitr)

-library(methods)

-opts_chunk$set(tidy = FALSE, cache = FALSE)

+opts_chunk$set(tidy = FALSE, cache = TRUE)

 ```

-# Example evaluation of FOCUS Example Dataset D

 

 This is just a very simple vignette showing how to fit a degradation model for a parent 

 compound with one transformation product using `mkin`.  After loading the