Version bump, correct benchmark in vignette/compiled_models

Reorganisation of the vignette generation in the Makefile.
Improved YAML header in the R markdown vignettes.
Rebuilt vignettes with the package installed.

1 files changed, 15 insertions, 6 deletions

diff --git a/vignettes/FOCUS_L.Rmd b/vignettes/FOCUS_L.Rmd
index cd7711f6..584c43eb 100644
--- a/vignettes/FOCUS_L.Rmd
+++ b/vignettes/FOCUS_L.Rmd
@@ -1,15 +1,24 @@
-<!--

-%\VignetteEngine{knitr::knitr}

-%\VignetteIndexEntry{Example evaluation of FOCUS Laboratory Data L1 to L3}

--->

+---

+title: "`r (vignette_title <- 'Example evaluation of FOCUS Laboratory Data L1 to L3')`"

+author: "Johannes Ranke"

+date: "`r Sys.Date()`"

+output:

+  html_document:

+    css: mkin_vignettes.css

+    toc: true

+    mathjax: null

+    theme: united

+vignette: >

+  %\VignetteIndexEntry{`r vignette_title`}

+  %\VignetteEngine{knitr::rmarkdown}

+  \usepackage[utf8]{inputenc}

+---

 

 ```{r, include = FALSE}

 library(knitr)

 opts_chunk$set(tidy = FALSE, cache = TRUE)

 ```

 

-# Example evaluation of FOCUS Laboratory Data L1 to L3

-

 ## Laboratory Data L1

 

 The following code defines example dataset L1 from the FOCUS kinetics