Step back regarding confidence intervals of formation fractions

- Don't give confidence intervals for formation fractions that belong
  to a set, only for single formation fractions
- Update the vignette with history and background
- Correct 'isotropic' into 'isometric' in the ilr documentation, the
  README and the comments in transform_odeparms
- Candidate for release to CRAN

1 files changed, 21 insertions, 14 deletions

diff --git a/vignettes/references.bib b/vignettes/references.bib
index e069daf2..88caea60 100644
--- a/vignettes/references.bib
+++ b/vignettes/references.bib
@@ -1,7 +1,7 @@
 % This file was originally created with JabRef 2.7b.
 % Encoding: ISO8859_1
 
-@BOOK{bates88,
+@BOOK{bates1988,
   title = {Nonlinear regression and its applications},
   publisher = {Wiley-Interscience},
   year = {1988},
@@ -29,12 +29,12 @@
   url = {http://focus.jrc.ec.europa.eu/dk}
 }
 
-@MANUAL{rcore2013,
+@MANUAL{rcore2014,
   title = {\textsf{R}: A Language and Environment for Statistical Computing},
   author = {{R Development Core Team}},
   organization = {R Foundation for Statistical Computing},
   address = {Vienna, Austria},
-  year = {2013},
+  year = {2014},
   note = {{ISBN} 3-900051-07-0},
   url = {http://www.R-project.org}
 }
@@ -52,21 +52,20 @@
 	variables to chemical degradation data},
   author = {Johannes Ranke},
   year = {2013},
-  url = {http://CRAN.R-project.org/package/kinfit}
+  url = {http://CRAN.R-project.org/package=mkin}
 }
 
-@INPROCEEDINGS{schaefer2007,
-  author = {D. Sch\"{a}fer and M. Mikolasch and P. Rainbird and B. Harvey},
-  title = {{KinGUI}: a new kinetic software tool for evaluations according to
-	FOCUS degradation kinetics},
-  booktitle = {Proceedings of the XIII Symposium Pesticide Chemistry},
-  year = {2007},
-  editor = {Del Re A. A. M. and Capri E. and Fragoulis G. and Trevisan M.},
-  pages = {916--923},
-  address = {Piacenza}
+@Inproceedings{   schaefer2007,
+  title         = {{KinGUI}: a new kinetic software tool for evaluations according to {FOCUS} degradation kinetics},
+  author       = {D. Sch\"{a}fer and B. Mikolasch and P. Rainbird and B. Harvey},
+  booktitle    = {Proceedings of the XIII Symposium Pesticide Chemistry},
+  editor       = {Del Re A. A. M. and Capri E. and Fragoulis G. and Trevisan M.},
+  year          = {2007},
+  address       = {Piacenza},
+  pages         = {916--923}
 }
 
-@ARTICLE{soetaert10,
+@ARTICLE{soetaert2010,
   author = {Karline Soetaert and Thomas Petzoldt},
   title = {Inverse Modelling, Sensitivity and Monte Carlo Analysis in {R} Using
 	Package {FME}},
@@ -77,3 +76,11 @@
   number = {3},
   url = {http://www.jstatsoft.org/v33/i03/}
 }
+
+@Inproceedings{   ranke2012,
+  title         = {Parameter reliability in kinetic evaluation of environmental metabolism data - Assessment and the influence of model specification},
+  author       = {J. Ranke and R. Lehmann},
+  booktitle    = {SETAC World 20-24 May},
+  year          = {2012},
+  address       = {Berlin}
+}