diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 14:13:09 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 14:13:09 +0200 |
| commit | 0e9220c6b9132602a3d69e4be582a02da8b07822 (patch) | |
| tree | 327aed436a0bfc4df33e42f55fb2d56b04785a85 /vignettes/web_only/multistart.R | |
| parent | c615bd685d6a109306e68ea7b0516ba3d6805114 (diff) | |
Really test anova output, test covariates
Diffstat (limited to 'vignettes/web_only/multistart.R')
| -rw-r--r-- | vignettes/web_only/multistart.R | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/vignettes/web_only/multistart.R b/vignettes/web_only/multistart.R deleted file mode 100644 index 36612443..00000000 --- a/vignettes/web_only/multistart.R +++ /dev/null @@ -1,36 +0,0 @@ -## ----------------------------------------------------------------------------- -library(mkin) -dmta_ds <- lapply(1:7, function(i) { - ds_i <- dimethenamid_2018$ds[[i]]$data - ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA" - ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i] - ds_i -}) -names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title) -dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]]) -dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL - -## ----------------------------------------------------------------------------- -f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) -f_saem_full <- saem(f_mmkin) -illparms(f_saem_full) - -## ----------------------------------------------------------------------------- -f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parhist(f_saem_full_multi) - -## ----------------------------------------------------------------------------- -f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") -illparms(f_saem_reduced) -f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16) -parhist(f_saem_reduced_multi, lpos = "topright") - -## ----------------------------------------------------------------------------- -llhist(f_saem_reduced_multi) - -## ----------------------------------------------------------------------------- -parhist(f_saem_reduced_multi, lpos = "topright", llmin = -326, ylim = c(0.5, 2)) - -## ----------------------------------------------------------------------------- -anova(f_saem_full, best(f_saem_reduced_multi), test = TRUE) - |