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authorJohannes Ranke <jranke@uni-bremen.de>2022-09-28 16:34:57 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-09-28 16:34:57 +0200
commit3529f5ff498d7d054c7b1911ddfc4b242902b85d (patch)
tree4c642bfddcc68e353fe75e8037d39ad8f269d56e /vignettes/web_only/multistart.R
parent75f361bed527b91bec205c5452add13247760d61 (diff)
Fix handling of multistart fits with failures
Diffstat (limited to 'vignettes/web_only/multistart.R')
-rw-r--r--vignettes/web_only/multistart.R26
1 files changed, 0 insertions, 26 deletions
diff --git a/vignettes/web_only/multistart.R b/vignettes/web_only/multistart.R
deleted file mode 100644
index b995c545..00000000
--- a/vignettes/web_only/multistart.R
+++ /dev/null
@@ -1,26 +0,0 @@
-## -----------------------------------------------------------------------------
-library(mkin)
-dmta_ds <- lapply(1:7, function(i) {
- ds_i <- dimethenamid_2018$ds[[i]]$data
- ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA"
- ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i]
- ds_i
-})
-names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title)
-dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]])
-dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL
-
-## -----------------------------------------------------------------------------
-f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE)
-f_saem_full <- saem(f_mmkin)
-f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16)
-parhist(f_saem_full_multi)
-
-## -----------------------------------------------------------------------------
-f_saem_reduced <- update(f_saem_full, covariance.model = diag(c(1, 1, 0, 1)))
-f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16)
-parhist(f_saem_reduced_multi, lpos = "topright")
-
-## -----------------------------------------------------------------------------
-llhist(f_saem_reduced_multi)
-

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