diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-09-28 16:34:57 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-09-28 16:34:57 +0200 |
| commit | 3529f5ff498d7d054c7b1911ddfc4b242902b85d (patch) | |
| tree | 4c642bfddcc68e353fe75e8037d39ad8f269d56e /vignettes/web_only | |
| parent | 75f361bed527b91bec205c5452add13247760d61 (diff) | |
Fix handling of multistart fits with failures
Diffstat (limited to 'vignettes/web_only')
| -rw-r--r-- | vignettes/web_only/multistart.R | 26 | ||||
| -rw-r--r-- | vignettes/web_only/multistart_files/figure-html/unnamed-chunk-2-1.png | bin | 0 -> 76647 bytes | |||
| -rw-r--r-- | vignettes/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png | bin | 0 -> 70831 bytes |
3 files changed, 0 insertions, 26 deletions
diff --git a/vignettes/web_only/multistart.R b/vignettes/web_only/multistart.R deleted file mode 100644 index b995c545..00000000 --- a/vignettes/web_only/multistart.R +++ /dev/null @@ -1,26 +0,0 @@ -## ----------------------------------------------------------------------------- -library(mkin) -dmta_ds <- lapply(1:7, function(i) { - ds_i <- dimethenamid_2018$ds[[i]]$data - ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA" - ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i] - ds_i -}) -names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title) -dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]]) -dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL - -## ----------------------------------------------------------------------------- -f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) -f_saem_full <- saem(f_mmkin) -f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parhist(f_saem_full_multi) - -## ----------------------------------------------------------------------------- -f_saem_reduced <- update(f_saem_full, covariance.model = diag(c(1, 1, 0, 1))) -f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16) -parhist(f_saem_reduced_multi, lpos = "topright") - -## ----------------------------------------------------------------------------- -llhist(f_saem_reduced_multi) - diff --git a/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-2-1.png b/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-2-1.png Binary files differnew file mode 100644 index 00000000..17168f74 --- /dev/null +++ b/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-2-1.png diff --git a/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png b/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png Binary files differnew file mode 100644 index 00000000..17d99e4e --- /dev/null +++ b/vignettes/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png |
