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authorJohannes Ranke <jranke@uni-bremen.de>2019-09-18 18:30:21 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2019-09-18 18:30:21 +0200
commit1c7b39f3c542de75a1ba685fec3c154bef8a3301 (patch)
tree4e8fffd9841c2f8bea9ba6012363ef9d831227ed /vignettes
parentb2c75fa1f73167d3e3c9c7db1d561dd482090aab (diff)
Static documentation rebuilt by pkgdown
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
Diffstat (limited to 'vignettes')
-rw-r--r--vignettes/mkin_benchmarks.rdabin885 -> 880 bytes
-rw-r--r--vignettes/twa.Rmd8
-rw-r--r--vignettes/twa.html2
3 files changed, 4 insertions, 6 deletions
diff --git a/vignettes/mkin_benchmarks.rda b/vignettes/mkin_benchmarks.rda
index 764c874c..aa794a02 100644
--- a/vignettes/mkin_benchmarks.rda
+++ b/vignettes/mkin_benchmarks.rda
Binary files differ
diff --git a/vignettes/twa.Rmd b/vignettes/twa.Rmd
index 6ebb7b89..6f283eb2 100644
--- a/vignettes/twa.Rmd
+++ b/vignettes/twa.Rmd
@@ -74,8 +74,6 @@ $$f_\textrm{twa} = \frac{1}{t} \left(
Note that a method for calculating maximum moving window time weighted average
concentrations for a model fitted by 'mkinfit' or from parent decline model
-parameters is included in the
-['max_twa_parent'](https://pkgdown.jrwb.de/mkin/reference/max_twa_parent.html)
-function.
-If the same is needed for metabolites, the function
-['max_twa'](https://pkgdown.jrwb.de/pfm/reference/max_twa.html) from the 'pfm' package can be used.
+parameters is included in the `max_twa_parent()` function. If the same is
+needed for metabolites, the function `pfm::max_twa()` from the 'pfm' package
+can be used.
diff --git a/vignettes/twa.html b/vignettes/twa.html
index 0db7eeff..41989b5d 100644
--- a/vignettes/twa.html
+++ b/vignettes/twa.html
@@ -252,7 +252,7 @@ code > span.fu { color: #900; font-weight: bold; } code > span.er { color: #a61
<p><span class="math display">\[f_\textrm{twa} = \frac{1}{t} \left(
\frac{1}{k_1} \left( 1 - e^{- k_1 t_b} \right) +
\frac{e^{- k_1 t_b}}{k_2} \left( 1 - e^{- k_2 (t - t_b)} \right) \right) \]</span></p>
-<p>Note that a method for calculating maximum moving window time weighted average concentrations for a model fitted by ‘mkinfit’ or from parent decline model parameters is included in the <a href="https://pkgdown.jrwb.de/mkin/reference/max_twa_parent.html">‘max_twa_parent’</a> function. If the same is needed for metabolites, the function <a href="https://pkgdown.jrwb.de/pfm/reference/max_twa.html">‘max_twa’</a> from the ‘pfm’ package can be used.</p>
+<p>Note that a method for calculating maximum moving window time weighted average concentrations for a model fitted by ‘mkinfit’ or from parent decline model parameters is included in the <code>max_twa_parent()</code> function. If the same is needed for metabolites, the function <code>pfm::max_twa()</code> from the ‘pfm’ package can be used.</p>
<div id="refs" class="references">
<div id="ref-FOCUSkinetics2014">
<p>FOCUS Work Group on Degradation Kinetics. 2014. <em>Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in Eu Registration</em>. 1.1 ed. <a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="uri">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a>.</p>

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