diff options
| -rw-r--r-- | NEWS.md | 4 | ||||
| -rw-r--r-- | docs/articles/FOCUS_L.html | 38 | ||||
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 12 | ||||
| -rw-r--r-- | docs/news/index.html | 7 | ||||
| -rw-r--r-- | docs/reference/CAKE_export.html | 6 | ||||
| -rw-r--r-- | docs/reference/index.html | 2 | ||||
| -rw-r--r-- | docs/reference/mkinpredict.html | 2 | ||||
| -rw-r--r-- | docs/reference/mmkin.html | 2 | ||||
| -rw-r--r-- | man/CAKE_export.Rd | 2 |
9 files changed, 39 insertions, 36 deletions
@@ -1,4 +1,4 @@ -# mkin 0.9.47.6 (2018-11-26) +# mkin 0.9.47.6 (2019-01-31) - Add the function 'logLik.mkinfit' which makes it possible to calculate an AIC for mkinfit objects @@ -14,6 +14,8 @@ - 'tests/testthat/test_irls.R': Test if the components of the error model used to generate the data can be reproduced with moderate accuracy +- Add the function 'CAKE_export' to facilitate cross-checking of results + # mkin 0.9.47.5 (2018-09-14) - Make the two-component error model stop in cases where it is inadequate to avoid nls crashes on windows diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index daf887e6..b53ab0d0 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -111,15 +111,15 @@ <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:32 2019 -## Date of summary: Thu Jan 31 15:37:32 2019 +## Date of fit: Thu Jan 31 15:43:40 2019 +## Date of summary: Thu Jan 31 15:43:40 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.095 s +## Fitted with method Port using 37 model solutions performed in 0.094 s ## ## Weighting: none ## @@ -202,15 +202,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:34 2019 -## Date of summary: Thu Jan 31 15:37:34 2019 +## Date of fit: Thu Jan 31 15:43:42 2019 +## Date of summary: Thu Jan 31 15:43:42 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.492 s +## Fitted with method Port using 611 model solutions performed in 1.502 s ## ## Weighting: none ## @@ -297,15 +297,15 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:35 2019 -## Date of summary: Thu Jan 31 15:37:35 2019 +## Date of fit: Thu Jan 31 15:43:42 2019 +## Date of summary: Thu Jan 31 15:43:42 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.196 s +## Fitted with method Port using 81 model solutions performed in 0.195 s ## ## Weighting: none ## @@ -368,8 +368,8 @@ <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:36 2019 -## Date of summary: Thu Jan 31 15:37:36 2019 +## Date of fit: Thu Jan 31 15:43:43 2019 +## Date of summary: Thu Jan 31 15:43:43 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -378,7 +378,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.837 s +## Fitted with method Port using 336 model solutions performed in 0.836 s ## ## Weighting: none ## @@ -460,8 +460,8 @@ <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:37 2019 +## Date of fit: Thu Jan 31 15:43:44 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -470,7 +470,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.344 s +## Fitted with method Port using 137 model solutions performed in 0.34 s ## ## Weighting: none ## @@ -561,8 +561,8 @@ <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:38 2019 +## Date of fit: Thu Jan 31 15:43:45 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -621,8 +621,8 @@ <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:38 2019 +## Date of fit: Thu Jan 31 15:43:45 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index a1fa69f5..d7d76b49 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -126,14 +126,14 @@ <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.319 1.000 2.317 0.000 -## 1 deSolve, not compiled 3 17.483 7.539 17.473 0.000 -## 2 Eigenvalue based 3 2.857 1.232 2.852 0.003 +## 3 deSolve, compiled 3 2.331 1.000 2.330 0 +## 1 deSolve, not compiled 3 17.369 7.451 17.360 0 +## 2 Eigenvalue based 3 2.878 1.235 2.876 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 ## 2 0 0</code></pre> -<p>We see that using the compiled model is by a factor of around 8 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> +<p>We see that using the compiled model is by a factor of around 7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> </div> <div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2"> <h2 class="hasAnchor"> @@ -157,8 +157,8 @@ <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 4.102 1.000 4.100 0 -## 1 deSolve, not compiled 3 37.059 9.034 37.041 0 +## 2 deSolve, compiled 3 4.120 1.000 4.116 0 +## 1 deSolve, not compiled 3 37.011 8.983 36.993 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> diff --git a/docs/news/index.html b/docs/news/index.html index 1aa9e7a5..7736a28d 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -119,9 +119,9 @@ </div> - <div id="mkin-0-9-47-6-2018-11-26" class="section level1"> + <div id="mkin-0-9-47-6-2019-01-31" class="section level1"> <h1 class="page-header"> -<a href="#mkin-0-9-47-6-2018-11-26" class="anchor"></a>mkin 0.9.47.6 (2018-11-26)<small> Unreleased </small> +<a href="#mkin-0-9-47-6-2019-01-31" class="anchor"></a>mkin 0.9.47.6 (2019-01-31)<small> Unreleased </small> </h1> <ul> <li><p>Add the function ‘logLik.mkinfit’ which makes it possible to calculate an AIC for mkinfit objects</p></li> @@ -131,6 +131,7 @@ <li><p>‘mkinpredict’: Make the function generic and create a method for mkinfit objects</p></li> <li><p>‘mkinfit’: Improve the correctness of the fitted two component error model by fitting the mean absolute deviance at each observation against the observed values, weighting with the current two-component error model</p></li> <li><p>‘tests/testthat/test_irls.R’: Test if the components of the error model used to generate the data can be reproduced with moderate accuracy</p></li> +<li><p>Add the function ‘CAKE_export’ to facilitate cross-checking of results</p></li> </ul> </div> <div id="mkin-0-9-47-5-2018-09-14" class="section level1"> @@ -674,7 +675,7 @@ <div id="tocnav"> <h2>Contents</h2> <ul class="nav nav-pills nav-stacked"> - <li><a href="#mkin-0-9-47-6-2018-11-26">0.9.47.6</a></li> + <li><a href="#mkin-0-9-47-6-2019-01-31">0.9.47.6</a></li> <li><a href="#mkin-0-9-47-5-2018-09-14">0.9.47.5</a></li> <li><a href="#mkin-0-9-47-3">0.9.47.3</a></li> <li><a href="#mkin-0-9-47-2-2018-07-19">0.9.47.2</a></li> diff --git a/docs/reference/CAKE_export.html b/docs/reference/CAKE_export.html index f1768ecc..21dd46a9 100644 --- a/docs/reference/CAKE_export.html +++ b/docs/reference/CAKE_export.html @@ -6,7 +6,7 @@ <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> -<title>Export a list of datasets in wide format to a CAKE study file — CAKE_export • mkin</title> +<title>Export a list of datasets format to a CAKE study file — CAKE_export • mkin</title> <!-- jquery --> <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script> @@ -30,7 +30,7 @@ -<meta property="og:title" content="Export a list of datasets in wide format to a CAKE study file — CAKE_export" /> +<meta property="og:title" content="Export a list of datasets format to a CAKE study file — CAKE_export" /> <meta property="og:description" content="In addition to the datasets, the pathways in the degradation model can be specified as well." /> @@ -119,7 +119,7 @@ <div class="row"> <div class="col-md-9 contents"> <div class="page-header"> - <h1>Export a list of datasets in wide format to a CAKE study file</h1> + <h1>Export a list of datasets format to a CAKE study file</h1> <div class="hidden name"><code>CAKE_export.Rd</code></div> </div> diff --git a/docs/reference/index.html b/docs/reference/index.html index fb47d33e..7dd32430 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -374,7 +374,7 @@ <td> <p><code><a href="CAKE_export.html">CAKE_export()</a></code> </p> </td> - <td><p>Export a list of datasets in wide format to a CAKE study file</p></td> + <td><p>Export a list of datasets format to a CAKE study file</p></td> </tr> </tbody><tbody> <tr> diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index 294a90de..c126eec9 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -232,7 +232,7 @@ <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='error'>Error in mkinmod(parent = list(type = "SFO", to = "m1"), m1 = list(type = "SFO")): konnte Funktion "mkinmod" nicht finden</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), - <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> <span class='error'>Error in mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "eigen"): konnte Funktion "mkinpredict" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( + <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> <span class='error'>Error in mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "eigen"): konnte Funktion "mkinpredict" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0.001</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> <span class='error'>Error in mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "deSolve"): konnte Funktion "mkinpredict" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index 25f97738..af0b8f6f 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -186,7 +186,7 @@ <span class='no'>models</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>SFO_lin</span> <span class='kw'>=</span> <span class='no'>m_synth_SFO_lin</span>, <span class='kw'>FOMC_lin</span> <span class='kw'>=</span> <span class='no'>m_synth_FOMC_lin</span>)</div><div class='output co'>#> <span class='error'>Error in eval(expr, envir, enclos): Objekt 'm_synth_SFO_lin' nicht gefunden</span></div><div class='input'><span class='no'>datasets</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/lapply'>lapply</a></span>(<span class='no'>synthetic_data_for_UBA_2014</span>[<span class='fl'>1</span>:<span class='fl'>3</span>], <span class='kw'>function</span>(<span class='no'>x</span>) <span class='no'>x</span>$<span class='no'>data</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/names'>names</a></span>(<span class='no'>datasets</span>) <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/paste'>paste</a></span>(<span class='st'>"Dataset"</span>, <span class='fl'>1</span>:<span class='fl'>3</span>) -<span class='no'>time_default</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fits.0</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='error'>Error in mmkin(models, datasets, quiet = TRUE): konnte Funktion "mmkin" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0.001</span></div><div class='input'><span class='no'>time_1</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fits.4</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='error'>Error in mmkin(models, datasets, cores = 1, quiet = TRUE): konnte Funktion "mmkin" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0</span></div><div class='input'> +<span class='no'>time_default</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fits.0</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='error'>Error in mmkin(models, datasets, quiet = TRUE): konnte Funktion "mmkin" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0</span></div><div class='input'><span class='no'>time_1</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fits.4</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='error'>Error in mmkin(models, datasets, cores = 1, quiet = TRUE): konnte Funktion "mmkin" nicht finden</span></div><div class='output co'>#> <span class='message'>Timing stopped at: 0 0 0</span></div><div class='input'> <span class='no'>time_default</span></div><div class='output co'>#> <span class='error'>Error in eval(expr, envir, enclos): Objekt 'time_default' nicht gefunden</span></div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#> <span class='error'>Error in eval(expr, envir, enclos): Objekt 'time_1' nicht gefunden</span></div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#> <span class='error'>Error in endpoints(fits.0[["SFO_lin", 2]]): konnte Funktion "endpoints" nicht finden</span></div><div class='input'> <span class='co'># plot.mkinfit handles rows or columns of mmkin result objects</span> diff --git a/man/CAKE_export.Rd b/man/CAKE_export.Rd index 3a3da4d0..c7111bc8 100644 --- a/man/CAKE_export.Rd +++ b/man/CAKE_export.Rd @@ -1,7 +1,7 @@ \name{CAKE_export} \alias{CAKE_export} \title{ - Export a list of datasets in wide format to a CAKE study file + Export a list of datasets format to a CAKE study file } \description{ In addition to the datasets, the pathways in the degradation |