diff options
| -rw-r--r-- | data/mccall81_245T.RData | bin | 0 -> 759 bytes | |||
| -rw-r--r-- | data/mccall81_245T_soil_metabolism.RData | bin | 786 -> 0 bytes | |||
| -rw-r--r-- | man/mccall81_245T.Rd | 42 | ||||
| -rw-r--r-- | man/mccall81_245T_soil_metabolism.Rd | 35 |
4 files changed, 42 insertions, 35 deletions
diff --git a/data/mccall81_245T.RData b/data/mccall81_245T.RData Binary files differnew file mode 100644 index 00000000..530d83b6 --- /dev/null +++ b/data/mccall81_245T.RData diff --git a/data/mccall81_245T_soil_metabolism.RData b/data/mccall81_245T_soil_metabolism.RData Binary files differdeleted file mode 100644 index 1e6efa76..00000000 --- a/data/mccall81_245T_soil_metabolism.RData +++ /dev/null diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd new file mode 100644 index 00000000..6c1a1371 --- /dev/null +++ b/man/mccall81_245T.Rd @@ -0,0 +1,42 @@ +\name{mccall81_245T}
+\alias{mccall81_245T}
+\docType{data}
+\title{
+ Datasets on aerobic soil metabolism of 2,4,5-T in six soils
+}
+\description{
+ Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding
+ 2,4,5-trichlorophenol and 2,4,5-trichloroanisole as recovered in diethylether
+ extracts.
+}
+\usage{mccall81_245T}
+\format{
+ A dataframe containing the following variables.
+ \describe{
+ \item{\code{name}}{the name of the compound observed. Note that T245 is used as
+ an acronym for 2,4,5-T. T245 is a legitimate object name
+ in R, which is necessary for specifying models using
+ \code{\link{mkinmod}}.}
+ \item{\code{time}}{a numeric vector containing sampling times in days after
+ treatment}
+ \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity}
+ \item{\code{soil}}{a factor containing the name of the soil}
+ }
+}
+\source{
+ McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
+ \url{http://dx.doi.org/10.1021/jf00103a026}
+}
+\examples{
+ SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"),
+ phenol = list(type = "SFO", to = "anisole"),
+ anisole = list(type = "SFO"))
+ \dontrun{fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"))
+ summary(fit.1, data = FALSE)}
+ # No covariance matrix and k_phenol_sink is really small, therefore fix it to zero
+ fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"),
+ parms.ini = c(k_phenol_sink = 0),
+ fixed_parms = "k_phenol_sink")
+ summary(fit.2, data = FALSE)
+}
+\keyword{datasets}
diff --git a/man/mccall81_245T_soil_metabolism.Rd b/man/mccall81_245T_soil_metabolism.Rd deleted file mode 100644 index 2ccc23db..00000000 --- a/man/mccall81_245T_soil_metabolism.Rd +++ /dev/null @@ -1,35 +0,0 @@ -\name{mccall81_245T_soil_metabolism}
-\Rdversion{1.1}
-\alias{commerce}
-\alias{catlin}
-\alias{fargo}
-\alias{keith}
-\alias{walla_walla}
-\alias{cecil}
-\docType{data}
-\title{
- Datasets on aerobic soil metabolism of 2,4,5-T in six soils
-}
-\description{
- Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding 2,4,5-trichlorophenol and
- 2,4,5-trichloroanisole as recovered in diethylether extracts.
-}
-\usage{mccall81_245T_soil_metabolism}
-\format{
- 6 dataframes containing the following variables.
- \describe{
- \item{\code{name}}{the name of the compound observed. Note that T245 is used as an acronym for 2,4,5-T. T245 is
- a legitimate object name in R, which is necessary for
- specifying models using \code{\link{mkinmod}}.}
- \item{\code{time}}{a numeric vector containing sampling times in days after treatment}
- \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity}
- }
-}
-\source{
- McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
- \url{http://dx.doi.org/10.1021/jf00103a026}
-}
-\examples{
- commerce
-}
-\keyword{datasets}
|