diff options
| -rw-r--r-- | .Rbuildignore | 3 | ||||
| -rw-r--r-- | README.md | 8 | ||||
| -rw-r--r-- | inst/staticdocs/index.r | 63 | ||||
| -rw-r--r-- | vignettes/references.bib | 6 |
4 files changed, 9 insertions, 71 deletions
diff --git a/.Rbuildignore b/.Rbuildignore index 5ac1f320..b037b763 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -6,7 +6,7 @@ ^README.html$ ^mkin.Rcheck ^inst/web/* -^inst/staticdocs/* +^docs/* ^vignettes/.build.timestamp$ ^vignettes/*_cache$ ^vignettes/*_files$ @@ -23,3 +23,4 @@ ^vignettes/figure ^vignettes/FOCUS_Z.tex$ ^vignettes/mkin.tex$ +^_pkgdown.yml$ @@ -1,6 +1,6 @@ # mkin -[](http://cran.r-project.org/package=mkin) +[](https://cran.r-project.org/package=mkin) The R package **mkin** provides calculation routines for the analysis of chemical degradation data, including <b>m</b>ulticompartment <b>kin</b>etics as @@ -10,7 +10,7 @@ if several compartments are involved. ## Installation You can install the latest released version from -[CRAN](http://cran.r-project.org/package=mkin) from within R: +[CRAN](https://cran.r-project.org/package=mkin) from within R: ```r install.packages("mkin") @@ -121,7 +121,7 @@ BayerCropScience, which is based on the MatLab runtime environment. The companion package [kinfit](http://kinfit.r-forge.r-project.org/kinfit_static/index.html) (now deprecated) was [started in 2008](https://r-forge.r-project.org/scm/viewvc.php?view=rev&root=kinfit&revision=2) and -[first published](http://cran.r-project.org/src/contrib/Archive/kinfit/) on +[first published](https://cran.r-project.org/src/contrib/Archive/kinfit/) on CRAN on 01 May 2010. The first `mkin` code was @@ -140,7 +140,7 @@ Somewhat in parallel, Syngenta has sponsored the development of an `mkin` and KinGUII based GUI application called CAKE, which also adds IRLS and MCMC, is more limited in the model formulation, but puts more weight on usability. CAKE is available for download from the [CAKE -website](http://projects.tessella.com/cake), where you can also +website](http://showcase.tessella.com/products/cake), where you can also find a zip archive of the R scripts derived from `mkin`, published under the GPL license. diff --git a/inst/staticdocs/index.r b/inst/staticdocs/index.r deleted file mode 100644 index 2a976f70..00000000 --- a/inst/staticdocs/index.r +++ /dev/null @@ -1,63 +0,0 @@ -sd_section( - "Main functions", - "Essential functionality", - c("mkinmod", "mkinfit", "mmkin") -) -sd_section( - "Show results", - "Functions working on mkinfit objects", - c("plot.mkinfit", - "summary.mkinfit", - "mkinresplot", - "mkinparplot", - "endpoints", - "mkinerrmin") -) -sd_section( - "Work with mmkin objects", - "Functions working with aggregated results", - c("[.mmkin", - "plot.mmkin") -) -sd_section( - "Datasets and known results", - "", - c("FOCUS_2006_datasets", - "FOCUS_2006_SFO_ref_A_to_F", - "FOCUS_2006_FOMC_ref_A_to_F", - "FOCUS_2006_HS_ref_A_to_F", - "FOCUS_2006_DFOP_ref_A_to_B", - "mccall81_245T", - "schaefer07_complex_case", - "synthetic_data_for_UBA_2014" - ) -) -sd_section( - "Helper functions", - "", - c("mkin_wide_to_long", - "mkin_long_to_wide", - "mkinsub", - "mkinds", "print.mkinds", - "print.mkinmod", - "mkinpredict", - "transform_odeparms", - "ilr", - "geometric_mean") -) -sd_section( - "Analytical solutions", - "Parent only model solutions", - c("SFO.solution", - "FOMC.solution", - "DFOP.solution", - "SFORB.solution", - "HS.solution", - "IORE.solution" - ) -) -sd_section( - "Deprecated functions", - "Functions that have been superseeded", - c("mkinplot") -) diff --git a/vignettes/references.bib b/vignettes/references.bib index da51602f..b465f828 100644 --- a/vignettes/references.bib +++ b/vignettes/references.bib @@ -47,7 +47,7 @@ address = {Vienna, Austria}, year = {2016}, note = {{ISBN} 3-900051-07-0}, - url = {http://www.R-project.org} + url = {https://www.R-project.org} } @MANUAL{pkg:kinfit, @@ -55,14 +55,14 @@ degradation data}, author = {J. Ranke}, year = {2015}, - url = {http://CRAN.R-project.org/package=kinfit} + url = {https://CRAN.R-project.org/package=kinfit} } @MANUAL{pkg:mkin, title = {`mkin`: {K}inetic evaluation of chemical degradation data}, author = {J. Ranke}, year = {2016}, - url = {http://CRAN.R-project.org/package=mkin} + url = {https://CRAN.R-project.org/package=mkin} } @Inproceedings{ schaefer2007, |