diff options
| -rw-r--r-- | NEWS.md | 4 | ||||
| -rw-r--r-- | R/plot.mixed.mmkin.R | 10 | ||||
| -rw-r--r-- | R/plot.mkinfit.R | 2 |
3 files changed, 8 insertions, 8 deletions
@@ -16,9 +16,9 @@ - 'transform_odeparms', 'backtransform_odeparms': Use logit transformation for solitary fractions like the g parameter of the DFOP model, or formation fractions for a pathway to only one target variable -- 'plot.mmkin': Add a ylab argument, making it possible to customize the y axis label of the panels on the left without affecting the residual plots +- 'plot.mmkin': Add a ylab argument, making it possible to customize the y axis label of the panels on the left without affecting the residual plots. Reduce legend size and vertical distance between panels -- 'plot.mkinfit': Change default ylab from "Observed" to "Residue" +- 'plot.mkinfit': Change default ylab from "Observed" to "Residue". Pass xlab to residual plot if show_residuals is TRUE. ## Mixed-effects models diff --git a/R/plot.mixed.mmkin.R b/R/plot.mixed.mmkin.R index 109df283..1674d855 100644 --- a/R/plot.mixed.mmkin.R +++ b/R/plot.mixed.mmkin.R @@ -61,7 +61,7 @@ plot.mixed.mmkin <- function(x, ymax = "auto", maxabs = "auto", ncol.legend = ifelse(length(i) <= 3, length(i) + 1, ifelse(length(i) <= 8, 3, 4)), nrow.legend = ceiling((length(i) + 1) / ncol.legend), - rel.height.legend = 0.03 + 0.08 * nrow.legend, + rel.height.legend = 0.02 + 0.07 * nrow.legend, rel.height.bottom = 1.1, pch_ds = 1:length(i), col_ds = pch_ds + 1, @@ -182,7 +182,7 @@ plot.mixed.mmkin <- function(x, n_plot_rows + 1, 2, byrow = TRUE) layout(layout_matrix, heights = rel.heights) - par(mar = c(0.1, 2.1, 0.6, 2.1)) + par(mar = c(0.1, 2.1, 0.1, 2.1)) # Empty plot with legend if (!is.null(pred_over)) lty_over <- seq(2, length.out = length(pred_over)) @@ -217,15 +217,15 @@ plot.mixed.mmkin <- function(x, # Margins for bottom row of plots when we have more than one row # This is the only row that needs to show the x axis legend if (plot_row == n_plot_rows) { - par(mar = c(5.1, 4.1, 2.1, 2.1)) + par(mar = c(5.1, 4.1, 1.1, 2.1)) } else { - par(mar = c(3.0, 4.1, 2.1, 2.1)) + par(mar = c(3.0, 4.1, 1.1, 2.1)) } plot(pred_pop$time, pred_pop[[obs_var]], type = "l", lwd = 2, lty = lty_pop, xlim = xlim, ylim = ylim_row, - xlab = xlab, ylab = obs_var, frame = frame) + xlab = xlab, ylab = paste("Residues", obs_var), frame = frame) if (!is.null(pred_over)) { for (i_over in seq_along(pred_over)) { diff --git a/R/plot.mkinfit.R b/R/plot.mkinfit.R index 9dbc91d7..eced40a4 100644 --- a/R/plot.mkinfit.R +++ b/R/plot.mkinfit.R @@ -277,7 +277,7 @@ plot.mkinfit <- function(x, fit = x, if (show_residuals) { mkinresplot(fit, obs_vars = row_obs_vars, standardized = standardized, pch_obs = pch_obs[row_obs_vars], col_obs = col_obs[row_obs_vars], - legend = FALSE, frame = frame) + legend = FALSE, frame = frame, xlab = xlab) } # Show error model plot if requested |