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-rw-r--r--man/synthetic_data_for_UBA_2014.Rd2
-rw-r--r--tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt13
-rw-r--r--tests/testthat/test_plots_summary_twa.R3
3 files changed, 4 insertions, 14 deletions
diff --git a/man/synthetic_data_for_UBA_2014.Rd b/man/synthetic_data_for_UBA_2014.Rd
index d68f45d4..af67fb82 100644
--- a/man/synthetic_data_for_UBA_2014.Rd
+++ b/man/synthetic_data_for_UBA_2014.Rd
@@ -43,6 +43,7 @@
measurement error in analytical chemistry. Technometrics 37(2), 176-184.
}
\examples{
+\dontrun{
# The data have been generated using the following kinetic models
m_synth_SFO_lin <- mkinmod(parent = list(type = "SFO", to = "M1"),
M1 = list(type = "SFO", to = "M2"),
@@ -138,7 +139,6 @@ d_synth_err_names = c(
# This is just one example of an evaluation using the kinetic model used for
# the generation of the data
-\dontrun{
fit <- mkinfit(m_synth_SFO_lin, synthetic_data_for_UBA_2014[[1]]$data,
quiet = TRUE)
plot_sep(fit)
diff --git a/tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt b/tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
index 8abc15e7..66ab9348 100644
--- a/tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
+++ b/tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
@@ -42,18 +42,7 @@ log_k_m1_sink -5.248 0.13320 -5.518 -4.977
sigma 3.126 0.35850 2.396 3.855
Parameter correlation:
- parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink
-parent_0 1e+00 6e-01 -6e-02 -2e-01
-log_k_parent_sink 6e-01 1e+00 -9e-02 -6e-01
-log_k_parent_m1 -6e-02 -9e-02 1e+00 5e-01
-log_k_m1_sink -2e-01 -6e-01 5e-01 1e+00
-sigma 1e-09 -9e-10 2e-08 -1e-10
- sigma
-parent_0 1e-09
-log_k_parent_sink -9e-10
-log_k_parent_m1 2e-08
-log_k_m1_sink -1e-10
-sigma 1e+00
+NULL
Backtransformed parameters:
Confidence intervals for internally transformed parameters are asymmetric.
diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R
index 9c802b00..089290f6 100644
--- a/tests/testthat/test_plots_summary_twa.R
+++ b/tests/testthat/test_plots_summary_twa.R
@@ -52,6 +52,7 @@ test_that("Summaries are reproducible", {
test_summary$date.fit <- "Dummy date for testing"
test_summary$date.summary <- "Dummy date for testing"
test_summary$calls <- "test 0"
+ test_summary$Corr <- signif(test_summary$Corr, 1)
test_summary$time <- c(elapsed = "test time 0")
# The correlation matrix is quite platform dependent
# It differs between i386 and amd64 on Windows
@@ -83,7 +84,7 @@ test_that("Summaries are reproducible", {
# The correlation matrix is quite platform dependent
# It differs between i386 and amd64 on Windows
# and between Travis and my own Linux system
- test_summary_3$Corr <- signif(test_summary_3$Corr, 1)
+ test_summary_3$Corr <- NULL
expect_known_output(print(test_summary_3), "summary_DFOP_FOCUS_D_deSolve.txt")
})

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