diff options
| -rw-r--r-- | tests/testthat/summary_saem_biphasic_s.txt | 52 | ||||
| -rw-r--r-- | tests/testthat/test_mixed.R | 2 |
2 files changed, 27 insertions, 27 deletions
diff --git a/tests/testthat/summary_saem_biphasic_s.txt b/tests/testthat/summary_saem_biphasic_s.txt index b30e35b8..58bcddfb 100644 --- a/tests/testthat/summary_saem_biphasic_s.txt +++ b/tests/testthat/summary_saem_biphasic_s.txt @@ -24,9 +24,9 @@ Variance model: Constant variance Mean of starting values for individual parameters: parent_0 k_m1 f_parent_to_m1 k1 k2 - 1.0e+02 4.6e-03 4.8e-01 6.4e-02 1.1e-02 + 1e+02 5e-03 5e-01 6e-02 1e-02 g - 4.6e-01 + 5e-01 Fixed degradation parameter values: None @@ -38,39 +38,39 @@ Likelihood computed by importance sampling 2681 2690 -1328 Optimised parameters: - est. lower upper -parent_0 1.0e+02 1.0e+02 1.0e+02 -k_m1 4.9e-03 4.2e-03 5.6e-03 -f_parent_to_m1 4.8e-01 4.3e-01 5.3e-01 -k1 6.2e-02 4.7e-02 7.6e-02 -k2 1.2e-02 9.6e-03 1.4e-02 -g 4.6e-01 4.1e-01 5.1e-01 + est. lower upper +parent_0 1e+02 1e+02 1e+02 +k_m1 5e-03 4e-03 6e-03 +f_parent_to_m1 5e-01 4e-01 5e-01 +k1 6e-02 5e-02 8e-02 +k2 1e-02 1e-02 1e-02 +g 5e-01 4e-01 5e-01 Correlation: - prn_0 k_m1 f___1 k1 k2 -k_m1 -0.17 -f_parent_to_m1 -0.14 0.38 -k1 0.13 -0.01 -0.02 -k2 0.04 0.14 0.03 0.20 -g -0.07 -0.21 -0.06 -0.40 -0.53 + pr_0 k_m1 f___ k1 k2 +k_m1 -0.2 +f_parent_to_m1 -0.1 0.4 +k1 0.1 0.0 0.0 +k2 0.0 0.1 0.0 0.2 +g -0.1 -0.2 -0.1 -0.4 -0.5 Random effects: - est. lower upper -SD.parent_0 1.2032 0.27 2.13 -SD.k_m1 0.0027 -8.31 8.31 -SD.f_parent_to_m1 0.3358 0.21 0.46 -SD.k1 0.4210 0.26 0.58 -SD.k2 0.2800 0.17 0.39 -SD.g 0.0100 -2.72 2.74 + est. lower upper +SD.parent_0 1.203 0.3 2.1 +SD.k_m1 0.003 -8.3 8.3 +SD.f_parent_to_m1 0.336 0.2 0.5 +SD.k1 0.421 0.3 0.6 +SD.k2 0.280 0.2 0.4 +SD.g 0.010 -2.7 2.7 Variance model: est. lower upper -a.1 2.9 2.7 3 +a.1 3 3 3 Resulting formation fractions: - ff -parent_m1 0.48 -parent_sink 0.52 + ff +parent_m1 0.5 +parent_sink 0.5 Estimated disappearance times: DT50 DT90 DT50back DT50_k1 DT50_k2 diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R index dbcc66ce..130d4596 100644 --- a/tests/testthat/test_mixed.R +++ b/tests/testthat/test_mixed.R @@ -41,7 +41,7 @@ test_that("saemix results are reproducible for biphasic fits", { test_summary$date.summary <- "Dummy date for testing" test_summary$time <- c(elapsed = "test time 0") - expect_known_output(print(test_summary, digits = 2), "summary_saem_biphasic_s.txt") + expect_known_output(print(test_summary, digits = 1), "summary_saem_biphasic_s.txt") dfop_sfo_pop <- as.numeric(dfop_sfo_pop) no_k1 <- c(1, 2, 3, 5, 6) |