diff options
| -rw-r--r-- | log/test.log | 20 | ||||
| -rw-r--r-- | tests/testthat/print_sfo_saem_1.txt | 6 | ||||
| -rw-r--r-- | tests/testthat/summary_hfit_sfo_tc.txt | 2 |
3 files changed, 14 insertions, 14 deletions
diff --git a/log/test.log b/log/test.log index cb123776..efa30d17 100644 --- a/log/test.log +++ b/log/test.log @@ -1,22 +1,22 @@ ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.3s] +✔ | 5 | Analytical solutions for coupled models [3.4s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.1s] -✔ | 1 12 | Dimethenamid data from 2018 [32.5s] +✔ | 12 | Confidence intervals and p-values [1.0s] +✔ | 1 12 | Dimethenamid data from 2018 [31.9s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [5.1s] +✔ | 14 | Error model fitting [4.9s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.6s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits @@ -28,20 +28,20 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] ✔ | 16 | Plotting [10.0s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 28 | saemix parent models [183.3s] +✔ | 28 | saemix parent models [180.2s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] -✔ | 7 | Fitting the SFORB model [3.7s] +✔ | 7 | Fitting the SFORB model [3.6s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] -✔ | 9 | Hypothesis tests [8.1s] +✔ | 9 | Hypothesis tests [7.8s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 282.2 s +Duration: 277.4 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) diff --git a/tests/testthat/print_sfo_saem_1.txt b/tests/testthat/print_sfo_saem_1.txt index 34eea058..a11e1e96 100644 --- a/tests/testthat/print_sfo_saem_1.txt +++ b/tests/testthat/print_sfo_saem_1.txt @@ -7,13 +7,13 @@ Data: Likelihood computed by importance sampling AIC BIC logLik - 1312 1316 -650 + 1311 1315 -649 Fitted parameters: estimate lower upper -parent_0 1e+02 99.28 1e+02 +parent_0 1e+02 99.13 1e+02 k_parent 4e-02 0.03 4e-02 a.1 9e-01 0.75 1e+00 b.1 5e-02 0.04 5e-02 -SD.parent_0 2e-01 -6.33 7e+00 +SD.parent_0 7e-01 -1.09 3e+00 SD.k_parent 3e-01 0.20 4e-01 diff --git a/tests/testthat/summary_hfit_sfo_tc.txt b/tests/testthat/summary_hfit_sfo_tc.txt index e3e2f7e4..ad701cee 100644 --- a/tests/testthat/summary_hfit_sfo_tc.txt +++ b/tests/testthat/summary_hfit_sfo_tc.txt @@ -45,7 +45,7 @@ SD.log_k_parent 0.3 0.1 0.4 Variance model: est. lower upper -a.1 0.90 0.64 1.17 +a.1 0.91 0.64 1.17 b.1 0.05 0.04 0.06 Backtransformed parameters: |