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-rw-r--r--check.log12
-rw-r--r--test.log12
-rw-r--r--tests/testthat/FOCUS_2006_D.csf2
3 files changed, 9 insertions, 17 deletions
diff --git a/check.log b/check.log
index c31c3b2c..1f2ee70f 100644
--- a/check.log
+++ b/check.log
@@ -56,11 +56,7 @@ Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
-* checking examples ... NOTE
-Examples with CPU or elapsed time > 5s
- user system elapsed
-plot.mkinfit 9.307 0.084 9.396
-mkinerrplot 9.150 0.076 9.229
+* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
@@ -69,9 +65,5 @@ mkinerrplot 9.150 0.076 9.229
* checking PDF version of manual ... OK
* DONE
-Status: 1 NOTE
-See
- ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’
-for details.
-
+Status: OK
diff --git a/test.log b/test.log
index 58aa129f..8926f498 100644
--- a/test.log
+++ b/test.log
@@ -2,18 +2,18 @@ Loading mkin
Testing mkin
✔ | OK F W S | Context
⠏ | 0 | Export dataset for reading into CAKE ✔ | 1 | Export dataset for reading into CAKE
- ⠏ | 0 | Error model fitting ⠋ | 1 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 11 | Error model fitting ⠹ | 13 | Error model fitting ⠸ | 14 | Error model fitting ⠼ | 15 | Error model fitting ⠴ | 16 | Error model fitting ⠦ | 17 | Error model fitting ⠧ | 18 | Error model fitting ⠇ | 19 | Error model fitting ⠏ | 20 | Error model fitting ✔ | 20 | Error model fitting [414.2 s]
+ ⠏ | 0 | Error model fitting ⠋ | 1 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 11 | Error model fitting ⠹ | 13 | Error model fitting ⠸ | 14 | Error model fitting ⠼ | 15 | Error model fitting ⠴ | 16 | Error model fitting ⠦ | 17 | Error model fitting ⠧ | 18 | Error model fitting ⠇ | 19 | Error model fitting ⠏ | 20 | Error model fitting ✔ | 20 | Error model fitting [414.1 s]
⠏ | 0 | Calculation of FOCUS chi2 error levels ⠋ | 1 | Calculation of FOCUS chi2 error levels ⠹ | 3 | Calculation of FOCUS chi2 error levels ⠼ | 5 | Calculation of FOCUS chi2 error levels ✔ | 5 | Calculation of FOCUS chi2 error levels [3.5 s]
⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠙ | 2 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠸ | 4 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠇ | 9 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.7 s]
⠏ | 0 | Test fitting the decline of metabolites from their maximum ⠋ | 1 | Test fitting the decline of metabolites from their maximum ⠹ | 3 | Test fitting the decline of metabolites from their maximum ⠼ | 5 | Test fitting the decline of metabolites from their maximum ✔ | 6 | Test fitting the decline of metabolites from their maximum [0.9 s]
⠏ | 0 | Fitting the logistic model ⠋ | 1 | Fitting the logistic model ✔ | 1 | Fitting the logistic model [0.9 s]
⠏ | 0 | Test dataset class mkinds used in gmkin ✔ | 1 | Test dataset class mkinds used in gmkin
- ⠏ | 0 | Special cases of mkinfit calls ⠋ | 1 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [2.6 s]
+ ⠏ | 0 | Special cases of mkinfit calls ⠋ | 1 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [2.7 s]
⠏ | 0 | mkinmod model generation and printing ⠇ | 9 | mkinmod model generation and printing ✔ | 9 | mkinmod model generation and printing [0.2 s]
⠏ | 0 | Model predictions with mkinpredict ⠋ | 1 | Model predictions with mkinpredict ✔ | 3 | Model predictions with mkinpredict [0.3 s]
- ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.0 s]
- ⠏ | 0 | Fitting of parent only models ⠋ | 1 | Fitting of parent only models ⠙ | 2 | Fitting of parent only models ⠹ | 3 | Fitting of parent only models ⠸ | 4 | Fitting of parent only models ⠼ | 5 | Fitting of parent only models ⠴ | 6 | Fitting of parent only models ⠦ | 7 | Fitting of parent only models ⠧ | 8 | Fitting of parent only models ⠇ | 9 | Fitting of parent only models ⠏ | 10 | Fitting of parent only models ⠋ | 11 | Fitting of parent only models ⠙ | 12 | Fitting of parent only models ⠹ | 13 | Fitting of parent only models ⠴ | 16 | Fitting of parent only models ⠧ | 18 | Fitting of parent only models ⠏ | 20 | Fitting of parent only models ✔ | 21 | Fitting of parent only models [40.7 s]
- ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
+ ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.1 s]
+ ⠏ | 0 | Fitting of parent only models ⠋ | 1 | Fitting of parent only models ⠙ | 2 | Fitting of parent only models ⠹ | 3 | Fitting of parent only models ⠸ | 4 | Fitting of parent only models ⠼ | 5 | Fitting of parent only models ⠴ | 6 | Fitting of parent only models ⠦ | 7 | Fitting of parent only models ⠧ | 8 | Fitting of parent only models ⠇ | 9 | Fitting of parent only models ⠏ | 10 | Fitting of parent only models ⠋ | 11 | Fitting of parent only models ⠙ | 12 | Fitting of parent only models ⠹ | 13 | Fitting of parent only models ⠴ | 16 | Fitting of parent only models ⠧ | 18 | Fitting of parent only models ⠏ | 20 | Fitting of parent only models ✔ | 21 | Fitting of parent only models [40.9 s]
+ ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s]
⠏ | 0 | Summary ✔ | 1 | Summary
⠏ | 0 | Plotting ⠹ | 3 | Plotting ✔ | 4 | Plotting [0.3 s]
⠏ | 0 | AIC calculation ✔ | 2 | AIC calculation
@@ -21,7 +21,7 @@ Testing mkin
⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014) ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.1 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 491.4 s
+Duration: 491.6 s
OK: 125
Failed: 0
diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf
index 668b1151..e7897dc5 100644
--- a/tests/testthat/FOCUS_2006_D.csf
+++ b/tests/testthat/FOCUS_2006_D.csf
@@ -5,7 +5,7 @@ Description:
MeasurementUnits: % AR
TimeUnits: days
Comments: Created using mkin::CAKE_export
-Date: 2019-06-05
+Date: 2019-07-03
Optimiser: IRLS
[Data]

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