diff options
| -rw-r--r-- | DESCRIPTION | 6 | ||||
| -rw-r--r-- | build.log | 2 | ||||
| -rw-r--r-- | check.log | 19 | ||||
| -rw-r--r-- | man/dimethenamid_2018.Rd | 4 | ||||
| -rw-r--r-- | test.log | 16 | ||||
| -rw-r--r-- | tests/testthat/test_f_time_norm.R | 2 |
6 files changed, 21 insertions, 28 deletions
diff --git a/DESCRIPTION b/DESCRIPTION index f5b7f070..8450ead0 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: mkin Type: Package Title: Kinetic Evaluation of Chemical Degradation Data -Version: 1.0.4 -Date: 2021-04-20 +Version: 1.0.5 +Date: 2021-09-15 Authors@R: c( person("Johannes", "Ranke", role = c("aut", "cre", "cph"), email = "jranke@uni-bremen.de", @@ -31,4 +31,4 @@ VignetteBuilder: knitr BugReports: https://github.com/jranke/mkin/issues/ URL: https://pkgdown.jrwb.de/mkin/ Roxygen: list(markdown = TRUE) -RoxygenNote: 7.1.1 +RoxygenNote: 7.1.2 @@ -6,5 +6,5 @@ * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories -* building ‘mkin_1.0.4.tar.gz’ +* building ‘mkin_1.0.5.tar.gz’ @@ -1,16 +1,14 @@ * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’ -* using R version 4.0.5 (2021-03-31) +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using options ‘--no-tests --as-cran’ * checking for file ‘mkin/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘mkin’ version ‘1.0.4’ +* this is package ‘mkin’ version ‘1.0.5’ * package encoding: UTF-8 -* checking CRAN incoming feasibility ... NOTE +* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’ - -The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK @@ -43,9 +41,7 @@ The Date field is over a month old. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK -* checking R code for possible problems ... NOTE -mmkin: possible error in Sys.info("sysname"): unused argument - ("sysname") +* checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK @@ -57,6 +53,7 @@ mmkin: possible error in Sys.info("sysname"): unused argument * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK +* checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK @@ -71,9 +68,5 @@ mmkin: possible error in Sys.info("sysname"): unused argument * checking for detritus in the temp directory ... OK * DONE -Status: 2 NOTEs -See - ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ -for details. - +Status: OK diff --git a/man/dimethenamid_2018.Rd b/man/dimethenamid_2018.Rd index b6f761e8..6c251363 100644 --- a/man/dimethenamid_2018.Rd +++ b/man/dimethenamid_2018.Rd @@ -5,13 +5,13 @@ \alias{dimethenamid_2018} \title{Aerobic soil degradation data on dimethenamid and dimethenamid-P from the EU assessment in 2018} \format{ -An \link{mkindsg} object grouping eight datasets with some meta information +An \link{mkindsg} object grouping seven datasets with some meta information } \source{ Rapporteur Member State Germany, Co-Rapporteur Member State Bulgaria (2018) Renewal Assessment Report Dimethenamid-P Volume 3 - B.8 Environmental fate and behaviour Rev. 2 - November 2017 -\url{http://registerofquestions.efsa.europa.eu/roqFrontend/outputLoader?output=ON-5211} +\url{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} } \usage{ dimethenamid_2018 @@ -7,7 +7,7 @@ Loading required package: parallel ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.3 s] -✔ | 14 | Error model fitting [4.2 s] +✔ | 14 | Error model fitting [4.0 s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s] @@ -19,19 +19,19 @@ Loading required package: parallel ✔ | 1 | mkinfit features [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s] -✔ | 9 | Nonlinear mixed-effects models [7.9 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s] +✔ | 9 | Nonlinear mixed-effects models [7.7 s] ✔ | 14 | Plotting [1.1 s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 7 | Fitting the SFORB model [3.7 s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s] +✔ | 7 | Fitting the SFORB model [3.4 s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1 s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1 s] ✔ | 9 | Hypothesis tests [8.0 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 40.3 s +Duration: 39.0 s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 174 ] diff --git a/tests/testthat/test_f_time_norm.R b/tests/testthat/test_f_time_norm.R index ca2ebd99..c5e0607c 100644 --- a/tests/testthat/test_f_time_norm.R +++ b/tests/testthat/test_f_time_norm.R @@ -13,7 +13,7 @@ test_that("Time step normalisation for a dataset works", { # Reference values from Dimethenamid RAR 2018 Vol3 B.8 expect_equal(round(dimethenamid_2018$f_time_norm, 3), c(1, - rep(0.971, 2), # p. 56 + 0.971, # p. 56 rep(round(1.329 * 0.924, 3), 2), # p. 51 0.623, 0.768, 0.673) # p. 45 ) |