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-rw-r--r--log/test.log20
-rw-r--r--tests/testthat/print_sfo_saem_1.txt6
-rw-r--r--tests/testthat/summary_hfit_sfo_tc.txt2
3 files changed, 14 insertions, 14 deletions
diff --git a/log/test.log b/log/test.log
index cb123776..efa30d17 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,22 +1,22 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.3s]
+✔ | 5 | Analytical solutions for coupled models [3.4s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 12 | Confidence intervals and p-values [1.1s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.5s]
+✔ | 12 | Confidence intervals and p-values [1.0s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.9s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.1s]
+✔ | 14 | Error model fitting [4.9s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.6s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
@@ -28,20 +28,20 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
✔ | 16 | Plotting [10.0s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 28 | saemix parent models [183.3s]
+✔ | 28 | saemix parent models [180.2s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
-✔ | 7 | Fitting the SFORB model [3.7s]
+✔ | 7 | Fitting the SFORB model [3.6s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
-✔ | 9 | Hypothesis tests [8.1s]
+✔ | 9 | Hypothesis tests [7.8s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 282.2 s
+Duration: 277.4 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
diff --git a/tests/testthat/print_sfo_saem_1.txt b/tests/testthat/print_sfo_saem_1.txt
index 34eea058..a11e1e96 100644
--- a/tests/testthat/print_sfo_saem_1.txt
+++ b/tests/testthat/print_sfo_saem_1.txt
@@ -7,13 +7,13 @@ Data:
Likelihood computed by importance sampling
AIC BIC logLik
- 1312 1316 -650
+ 1311 1315 -649
Fitted parameters:
estimate lower upper
-parent_0 1e+02 99.28 1e+02
+parent_0 1e+02 99.13 1e+02
k_parent 4e-02 0.03 4e-02
a.1 9e-01 0.75 1e+00
b.1 5e-02 0.04 5e-02
-SD.parent_0 2e-01 -6.33 7e+00
+SD.parent_0 7e-01 -1.09 3e+00
SD.k_parent 3e-01 0.20 4e-01
diff --git a/tests/testthat/summary_hfit_sfo_tc.txt b/tests/testthat/summary_hfit_sfo_tc.txt
index e3e2f7e4..ad701cee 100644
--- a/tests/testthat/summary_hfit_sfo_tc.txt
+++ b/tests/testthat/summary_hfit_sfo_tc.txt
@@ -45,7 +45,7 @@ SD.log_k_parent 0.3 0.1 0.4
Variance model:
est. lower upper
-a.1 0.90 0.64 1.17
+a.1 0.91 0.64 1.17
b.1 0.05 0.04 0.06
Backtransformed parameters:

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