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| -rw-r--r-- | NEWS.md | 20 |
1 files changed, 20 insertions, 0 deletions
@@ -1,8 +1,19 @@ +# CHANGES in mkin VERSION 0.9-39 + + + +# CHANGES in mkin VERSION 0.9-38 + +## BUG FIXES + +- Remove top-level file Rplots.pdf that R CMD check complained about + # CHANGES in mkin VERSION 0.9-37 ## MINOR CHANGES - `vignettes/compiled_models.html`: Show the performance improvement factor actually obtained when building the vignette, as well as mkin version, some system info and the CPU model used for building the vignette. + - `GNUMakefile`,`vignettes/*`: Clean up vignette generation and include table of contents in HTML vignettes. ## BUG FIXES @@ -14,8 +25,11 @@ ## MAJOR CHANGES - `summary.mkinfit()`: A one-sided t-test for significant difference of untransformed parameters from zero is now always shown, based on the assumption of normal distribution for estimators of all untransformed parameters. Use with caution, as this assumption is unrealistic e.g. for rate constants in these nonlinear kinetic models. + - If a compiler (gcc) is installed, use a version of the differential equation model compiled from C code, which is a huge performance boost for models where only the deSolve method works. + - `mkinmod()`: Create a list component $cf (of class CFuncList) in the list returned by mkinmod, if a version can be compiled from autogenerated C code (see above). + - `mkinfit()`: Set the default `solution_type` to `deSolve` when a compiled version of the model is present, except when an analytical solution is possible. ## MINOR CHANGES @@ -31,15 +45,21 @@ ## BUG FIXES - `mkinparplot()`: Avoid warnings that occurred when not all confidence intervals were available in the summary of the fit + - `print.summary.mkinfit()`: Fix printing the summary for the case that the number of iterations is not available + - NAMESPACE: export S3 methods plot.mkinfit, summary.mkinfit and print.summary.mkinfit to satisfy R CMD check on R-devel + - `mkinparplot()`: Avoid warning in R CMD check about undeclared global variable `Lower` ## NEW FEATURES - `mkinfit()`: Report successful termination when quiet = FALSE. This is helpful for more difficult problems fitted with reweight.method = obs, as no progress is often indicated during the reweighting. + - A first test using results established in the expertise written for the German Federal Environmental Agency (UBA) was added. + - Add synthetic datasets generated for expertise written for the German Federal Environmental Agency UBA + - Add tests based on these datasets # CHANGES in mkin VERSION 0.9-34 |