diff options
| -rw-r--r-- | man/Extract.mmkin.Rd | 5 | ||||
| -rw-r--r-- | man/mccall81_245T.Rd | 2 | ||||
| -rw-r--r-- | man/mkinfit.Rd | 7 | ||||
| -rw-r--r-- | man/mkinresplot.Rd | 2 | ||||
| -rw-r--r-- | man/mmkin.Rd | 7 | ||||
| -rw-r--r-- | man/plot.mkinfit.Rd | 2 | ||||
| -rw-r--r-- | man/plot.mmkin.Rd | 2 | ||||
| -rw-r--r-- | man/summary.mkinfit.Rd | 4 | ||||
| -rw-r--r-- | man/transform_odeparms.Rd | 2 |
9 files changed, 22 insertions, 11 deletions
diff --git a/man/Extract.mmkin.Rd b/man/Extract.mmkin.Rd index 361da3e4..cd40e247 100644 --- a/man/Extract.mmkin.Rd +++ b/man/Extract.mmkin.Rd @@ -26,8 +26,9 @@ Johannes Ranke } \examples{ - # Only use one core so we pass R CMD check - fits <- mmkin(c("SFO", "FOMC"), list(B = FOCUS_2006_B, C = FOCUS_2006_C), cores = 1) + # Only use one core, to pass R CMD check --as-cran + fits <- mmkin(c("SFO", "FOMC"), list(B = FOCUS_2006_B, C = FOCUS_2006_C), + cores = 1, quiet = TRUE) fits["FOMC", ] fits[, "B"] fits[, "B", drop = TRUE]$FOMC diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd index a2618d51..7cc5c363 100644 --- a/man/mccall81_245T.Rd +++ b/man/mccall81_245T.Rd @@ -38,7 +38,7 @@ # No covariance matrix and k_phenol_sink is really small, therefore fix it to zero
fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"),
parms.ini = c(k_phenol_sink = 0),
- fixed_parms = "k_phenol_sink")
+ fixed_parms = "k_phenol_sink", quiet = TRUE)
summary(fit.2, data = FALSE)
}
\keyword{datasets}
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index c6b6d601..8f65717a 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -216,6 +216,13 @@ mkinfit(mkinmod, observed, A list with "mkinfit" and "modFit" in the class attribute. A summary can be obtained by \code{\link{summary.mkinfit}}. } +\seealso{ + Plotting methods \code{\link{plot.mkinfit}} and + \code{\link{mkinparplot}}. + + Fitting of several models to several datasets in a single call to + \code{\link{mmkin}}. +} \note{ The implementation of iteratively reweighted least squares is inspired by the work of the KinGUII team at Bayer Crop Science (Walter Schmitt and Zhenglei diff --git a/man/mkinresplot.Rd b/man/mkinresplot.Rd index eaa861f4..cdcfbd37 100644 --- a/man/mkinresplot.Rd +++ b/man/mkinresplot.Rd @@ -58,7 +58,7 @@ mkinfit object. }
\examples{
model <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
-fit <- mkinfit(model, FOCUS_2006_D)
+fit <- mkinfit(model, FOCUS_2006_D, quiet = TRUE)
mkinresplot(fit, "m1")
}
\keyword{ hplot }
diff --git a/man/mmkin.Rd b/man/mmkin.Rd index 4859d658..f701890a 100644 --- a/man/mmkin.Rd +++ b/man/mmkin.Rd @@ -34,8 +34,11 @@ mmkin(models, datasets, } } \value{ - A matrix of "mkinfit" objects that can be indexed using the - model and dataset names as row and column indices. + A matrix of \code{\link{mkinfit}} objects that can be indexed using the model + and dataset names as row and column indices. +} +\seealso{ + \code{\link{[.mmkin}} for subsetting, \code{\link{plot.mmkin}} for plotting. } \author{ Johannes Ranke diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd index 816d7e1c..be3de9fd 100644 --- a/man/plot.mkinfit.Rd +++ b/man/plot.mkinfit.Rd @@ -83,7 +83,7 @@ # One parent compound, one metabolite, both single first order, path from # parent to sink included SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO")) -fit <- mkinfit(SFO_SFO, FOCUS_2006_D) +fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) plot(fit) } \author{ diff --git a/man/plot.mmkin.Rd b/man/plot.mmkin.Rd index 696b3d06..a3367234 100644 --- a/man/plot.mmkin.Rd +++ b/man/plot.mmkin.Rd @@ -47,7 +47,7 @@ \examples{ # Only use one core not to offend CRAN checks fits <- mmkin(c("FOMC", "HS"), list("FOCUS B" = FOCUS_2006_B, "FOCUS C" = FOCUS_2006_C), - cores = 1) + cores = 1, quiet = TRUE) plot(fits[, "FOCUS C"]) plot(fits["FOMC", ]) } diff --git a/man/summary.mkinfit.Rd b/man/summary.mkinfit.Rd index 472b5dec..746d9886 100644 --- a/man/summary.mkinfit.Rd +++ b/man/summary.mkinfit.Rd @@ -67,9 +67,9 @@ \url{http://focus.jrc.ec.europa.eu/dk}
}
\author{
- Johannes Ranke <jranke@{harlan.com,uni-bremen.de}>
+ Johannes Ranke
}
\examples{
- summary(mkinfit(mkinmod(parent = list(type = "SFO")), FOCUS_2006_A))
+ summary(mkinfit(mkinmod(parent = list(type = "SFO")), FOCUS_2006_A, quiet = TRUE))
}
\keyword{ utilities }
diff --git a/man/transform_odeparms.Rd b/man/transform_odeparms.Rd index cc1d1611..c6034424 100644 --- a/man/transform_odeparms.Rd +++ b/man/transform_odeparms.Rd @@ -65,7 +65,7 @@ SFO_SFO <- mkinmod( parent = list(type = "SFO", to = "m1", sink = TRUE), m1 = list(type = "SFO")) # Fit the model to the FOCUS example dataset D using defaults -fit <- mkinfit(SFO_SFO, FOCUS_2006_D) +fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) summary(fit, data=FALSE) # See transformed and backtransformed parameters \dontrun{ |