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| -rw-r--r-- | tests/testthat/test_FOMC_ill-defined.R | 44 |
1 files changed, 0 insertions, 44 deletions
diff --git a/tests/testthat/test_FOMC_ill-defined.R b/tests/testthat/test_FOMC_ill-defined.R deleted file mode 100644 index ee3d2b68..00000000 --- a/tests/testthat/test_FOMC_ill-defined.R +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright (C) 2016 Johannes Ranke -# Contact: jranke@uni-bremen.de - -# This file is part of the R package mkin - -# mkin is free software: you can redistribute it and/or modify it under the -# terms of the GNU General Public License as published by the Free Software -# Foundation, either version 3 of the License, or (at your option) any later -# version. - -# This program is distributed in the hope that it will be useful, but WITHOUT -# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS -# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more -# details. - -# You should have received a copy of the GNU General Public License along with -# this program. If not, see <http://www.gnu.org/licenses/> - -context("Fitting the FOMC model with large parameter correlation") - -# Dataset that I ran across during my work and for which the calculation of the -# Jacobian failed. Data were slightly fuzzed. -FOMC_test <- data.frame( - name = "test_compound", - time = c(0, 14, 31, 59, 91), - value = c(45.8, 28.0, 28.5, 35.1, 35.6)) - -test_that("Fitting with large parameter correlation gives warnings", { - - #skip("Skip test for warnings triggered by large parameter correlation as it failed on r-forge") - - # When fitting from the maximum, the Port algorithm does not converge (with - # default settings) - expect_warning( - fit.FOMC.Port <- mkinfit("FOMC", FOMC_test, method.modFit = "Port"), - "Optimisation by method Port did not converge") - - # When we use Levenberg-Marquardt, we get a problem estimating the Jacobian - # for the untransformed model - expect_warning( - fit.FOMC.Marq <- mkinfit("FOMC", FOMC_test, method.modFit = "Marq"), - "Calculation of the Jacobian failed for the cost function of the untransformed model") - -}) |