diff options
Diffstat (limited to 'R/mean_degparms.R')
| -rw-r--r-- | R/mean_degparms.R | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/R/mean_degparms.R b/R/mean_degparms.R index fdcc5c00..861f27b5 100644 --- a/R/mean_degparms.R +++ b/R/mean_degparms.R @@ -37,7 +37,7 @@ mean_degparms <- function(object, random = FALSE, test_log_parms = FALSE, conf.l parm_mat_trans_OK <- parm_mat_trans for (trans_parm in log_parm_trans_names) { parm_mat_trans_OK[trans_parm, ] <- ifelse(t_test_back_OK[trans_parm, ], - parm_mat_trans[trans_parm, ], default_log_parms) + parm_mat_trans[trans_parm, ], log(default_log_parms)) } } else { parm_mat_trans_OK <- parm_mat_trans @@ -47,6 +47,8 @@ mean_degparms <- function(object, random = FALSE, test_log_parms = FALSE, conf.l degparm_mat_trans <- parm_mat_trans[mean_degparm_names, , drop = FALSE] degparm_mat_trans_OK <- parm_mat_trans_OK[mean_degparm_names, , drop = FALSE] + # fixed in the sense of fixed effects, as this function was + # written to supply starting parameters for nlme fixed <- apply(degparm_mat_trans_OK, 1, mean, na.rm = TRUE) if (random) { random <- t(apply(degparm_mat_trans[mean_degparm_names, , drop = FALSE], 2, function(column) column - fixed)) |