diff options
Diffstat (limited to 'R/plot.mixed.mmkin.R')
| -rw-r--r-- | R/plot.mixed.mmkin.R | 18 |
1 files changed, 13 insertions, 5 deletions
diff --git a/R/plot.mixed.mmkin.R b/R/plot.mixed.mmkin.R index 2903a05c..3a444253 100644 --- a/R/plot.mixed.mmkin.R +++ b/R/plot.mixed.mmkin.R @@ -14,6 +14,8 @@ utils::globalVariables("ds") #' [mixed.mmkin] object #' @param conf.level Passed to [mean_degparms] in the case of an #' [mixed.mmkin] object +#' @param default_log_parms Passed to [mean_degparms] in the case of an +#' [mixed.mmkin] object #' @param rel.height.legend The relative height of the legend shown on top #' @param rel.height.bottom The relative height of the bottom plot row #' @param ymax Vector of maximum y axis values @@ -69,6 +71,7 @@ plot.mixed.mmkin <- function(x, pred_over = NULL, test_log_parms = FALSE, conf.level = 0.6, + default_log_parms = NA, ymax = "auto", maxabs = "auto", ncol.legend = ifelse(length(i) <= 3, length(i) + 1, ifelse(length(i) <= 8, 3, 4)), nrow.legend = ceiling((length(i) + 1) / ncol.legend), @@ -87,7 +90,8 @@ plot.mixed.mmkin <- function(x, backtransform = TRUE if (identical(class(x), "mixed.mmkin")) { - degparms_pop <- mean_degparms(x$mmkin, test_log_parms = test_log_parms, conf.level = conf.level) + degparms_pop <- mean_degparms(x$mmkin, test_log_parms = test_log_parms, + conf.level = conf.level, default_log_parms = default_log_parms) degparms_tmp <- parms(x$mmkin, transformed = TRUE) degparms_i <- as.data.frame(t(degparms_tmp[setdiff(rownames(degparms_tmp), names(fit_1$errparms)), ])) @@ -247,8 +251,7 @@ plot.mixed.mmkin <- function(x, par(mar = c(3.0, 4.1, 1.1, 2.1)) } - plot(pred_pop$time, pred_pop[[obs_var]], - type = "l", lwd = 2, lty = lty_pop, + plot(0, type = "n", xlim = xlim, ylim = ylim_row, xlab = xlab, ylab = paste("Residues", obs_var), frame = frame) @@ -267,6 +270,9 @@ plot.mixed.mmkin <- function(x, col = col_ds[ds_i], lty = lty_ds[ds_i]) } + lines(pred_pop$time, pred_pop[[obs_var]], + type = "l", lwd = 2, lty = lty_pop) + if (identical(maxabs, "auto")) { maxabs = max(abs(observed_row$residual), na.rm = TRUE) } @@ -274,7 +280,8 @@ plot.mixed.mmkin <- function(x, if (identical(resplot, "time")) { plot(0, type = "n", xlim = xlim, xlab = "Time", ylim = c(-1.2 * maxabs, 1.2 * maxabs), - ylab = if (standardized) "Standardized residual" else "Residual") + ylab = if (standardized) "Standardized residual" else "Residual", + frame = frame) abline(h = 0, lty = 2) @@ -289,7 +296,8 @@ plot.mixed.mmkin <- function(x, xlim = c(0, max(pred_ds[[obs_var]])), xlab = "Predicted", ylim = c(-1.2 * maxabs, 1.2 * maxabs), - ylab = if (standardized) "Standardized residual" else "Residual") + ylab = if (standardized) "Standardized residual" else "Residual", + frame = frame) abline(h = 0, lty = 2) |