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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 16 |
1 files changed, 8 insertions, 8 deletions
@@ -27,17 +27,17 @@ detailed guidance and helpful tools have been developed as detailed in ## Usage For a start, have a look a the code examples provided for -[`plot.mkinfit`](http://kinfit.r-forge.r-project.org/mkin_static/plot.mkinfit.html) +[`plot.mkinfit`](http://kinfit.r-forge.r-project.org/mkin_static/reference/plot.mkinfit.html) and -[`plot.mmkin`](http://kinfit.r-forge.r-project.org/mkin_static/plot.mmkin.html), and +[`plot.mmkin`](http://kinfit.r-forge.r-project.org/mkin_static/reference/plot.mmkin.html), and at the package vignettes -[`FOCUS L`](http://kinfit.r-forge.r-project.org/mkin_static/vignettes/FOCUS_L.html) and -[`FOCUS D`](http://kinfit.r-forge.r-project.org/mkin_static/vignettes/FOCUS_D.html). +[`FOCUS L`](http://kinfit.r-forge.r-project.org/mkin_static/articles/FOCUS_L.html) and +[`FOCUS D`](http://kinfit.r-forge.r-project.org/mkin_static/articles/FOCUS_D.html). ## Documentation -The [HTML documentation](http://jranke.github.io/mkin) is -maintained at the github project site. +The HTML documentation is available at [github](http://jranke.github.io/mkin) +and at [R-Forge](http://kinfit.r-forge.r-project.org/mkin_static/index.html). ## Features @@ -57,13 +57,13 @@ maintained at the github project site. using a numeric solver from the `deSolve` package (default is `lsoda`). * If a C compiler is installed, the kinetic models are compiled from automatically generated C code, see - [vignette `compiled_models`](http://kinfit.r-forge.r-project.org/mkin_static/vignettes/compiled_models.html). + [vignette `compiled_models`](http://kinfit.r-forge.r-project.org/mkin_static/articles/compiled_models.html). The autogeneration of C code was inspired by the [`ccSolve`](https://github.com/karlines/ccSolve) package. Thanks to Karline Soetaert for her work on that. * By default, kinetic rate constants and kinetic formation fractions are transformed internally using - [`transform_odeparms`](http://kinfit.r-forge.r-project.org/mkin_static/transform_odeparms.html) + [`transform_odeparms`](http://kinfit.r-forge.r-project.org/mkin_static/reference/transform_odeparms.html) so their estimators can more reasonably be expected to follow a normal distribution. This has the side effect that no constraints are needed in the optimisation. Thanks to René Lehmann for the nice |