diff options
Diffstat (limited to 'check.log')
| -rw-r--r-- | check.log | 71 |
1 files changed, 4 insertions, 67 deletions
@@ -24,27 +24,7 @@ Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’ * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK -* checking top-level files ... WARNING -Conversion of ‘README.md’ failed: -[WARNING] This document format requires a nonempty <title> element. - Please specify either ‘title’ or ‘pagetitle’ in the metadata. - Falling back to ‘README’ -Could not fetch https://codecov.io/github/jranke/mkin/branch/master/graphs/badge.svg -HttpExceptionRequest Request { - host = "codecov.io" - port = 443 - secure = True - requestHeaders = [] - path = "/github/jranke/mkin/branch/master/graphs/badge.svg" - queryString = "" - method = "GET" - proxy = Nothing - rawBody = False - redirectCount = 10 - responseTimeout = ResponseTimeoutDefault - requestVersion = HTTP/1.1 -} - ConnectionTimeout +* checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK @@ -64,13 +44,7 @@ HttpExceptionRequest Request { * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK -* checking Rd line widths ... NOTE -Rd file 'memkin.Rd': - \examples lines wider than 100 characters: - f_nlme_sfo_sfo_2 <- memkin(f_2[1, ], "pdDiag(parent_0 + log_k_parent_sink + log_k_parent_A1 + log_k_A1_sink ~ 1)") # explicit - f_nlme_sfo_sfo_3 <- memkin(f_2[1, ], "pdDiag(parent_0 + log_k_parent_sink + log_k_parent_A1 ~ 1)") # reduced - -These lines will be truncated in the PDF manual. +* checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK @@ -82,41 +56,7 @@ These lines will be truncated in the PDF manual. * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... ERROR -Running examples in ‘mkin-Ex.R’ failed -The error most likely occurred in: - -> base::assign(".ptime", proc.time(), pos = "CheckExEnv") -> ### Name: memkin -> ### Title: Estimation of parameter distributions from mmkin row objects -> ### Aliases: memkin -> -> ### ** Examples -> -> sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120) -> m_SFO <- mkinmod(parent = mkinsub("SFO")) -> d_SFO_1 <- mkinpredict(m_SFO, -+ c(k_parent_sink = 0.1), -+ c(parent = 98), sampling_times) -> d_SFO_1_long <- mkin_wide_to_long(d_SFO_1, time = "time") -> d_SFO_2 <- mkinpredict(m_SFO, -+ c(k_parent_sink = 0.05), -+ c(parent = 102), sampling_times) -> d_SFO_2_long <- mkin_wide_to_long(d_SFO_2, time = "time") -> d_SFO_3 <- mkinpredict(m_SFO, -+ c(k_parent_sink = 0.02), -+ c(parent = 103), sampling_times) -> d_SFO_3_long <- mkin_wide_to_long(d_SFO_3, time = "time") -> -> d1 <- add_err(d_SFO_1, function(value) 3, n = 1) -> d2 <- add_err(d_SFO_2, function(value) 2, n = 1) -> d3 <- add_err(d_SFO_3, function(value) 4, n = 1) -> ds <- c(d1 = d1, d2 = d2, d3 = d3) -> -> f <- mmkin("SFO", ds) -Error in .check_ncores(cores) : 8 simultaneous processes spawned -Calls: mmkin -> mclapply -> .check_ncores -Execution halted +* checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK @@ -126,8 +66,5 @@ Execution halted * checking for detritus in the temp directory ... OK * DONE -Status: 1 ERROR, 1 WARNING, 1 NOTE -See - ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ -for details. +Status: OK |