1 files changed, 54 insertions, 14 deletions
diff --git a/check.log b/check.log
index 7de944a5..f6ee39db 100644
--- a/check.log
+++ b/check.log
@@ -1,19 +1,14 @@
 * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’
-* using R version 4.0.5 (2021-03-31)
+* using R version 4.1.0 (2021-05-18)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using options ‘--no-tests --as-cran’
 * checking for file ‘mkin/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘mkin’ version ‘1.0.4.9000’
+* this is package ‘mkin’ version ‘1.0.5’
 * package encoding: UTF-8
-* checking CRAN incoming feasibility ... NOTE
+* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
 Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
-
-Version contains large components (1.0.4.9000)
-
-Unknown, possibly mis-spelled, fields in DESCRIPTION:
-  ‘Remotes’
 * checking package namespace information ... OK
 * checking package dependencies ... OK
 * checking if this is a source package ... OK
@@ -46,22 +41,68 @@ Unknown, possibly mis-spelled, fields in DESCRIPTION:
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... OK
+* checking R code for possible problems ... NOTE
+saemix_model: no visible global function definition for
+  ‘packageVersion’
+Undefined global functions or variables:
+  packageVersion
+Consider adding
+  importFrom("utils", "packageVersion")
+to your NAMESPACE file.
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
-* checking Rd cross-references ... OK
+* checking Rd cross-references ... WARNING
+Missing link or links in documentation object 'nlmixr.mmkin.Rd':
+  ‘nlmix_model’ ‘summary.nlmixr.mmkin’
+
+See section 'Cross-references' in the 'Writing R Extensions' manual.
 * checking for missing documentation entries ... OK
 * checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... OK
+* checking Rd \usage sections ... WARNING
+Undocumented arguments in documentation object 'mean_degparms'
+  ‘object’
+
+Undocumented arguments in documentation object 'nlmixr.mmkin'
+  ‘data’ ‘table’ ‘error_model’ ‘save’ ‘envir’
+Documented arguments not in \usage in documentation object 'nlmixr.mmkin':
+  ‘solution_type’
+
+Functions with \usage entries need to have the appropriate \alias
+entries, and all their arguments documented.
+The \usage entries must correspond to syntactically valid R code.
+See chapter ‘Writing R documentation files’ in the ‘Writing R
+Extensions’ manual.
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
 * checking contents of ‘data’ directory ... OK
 * checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
 * checking data for ASCII and uncompressed saves ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
-* checking examples ... OK
+* checking examples ... ERROR
+Running examples in ‘mkin-Ex.R’ failed
+The error most likely occurred in:
+
+> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
+> ### Name: nlmixr.mmkin
+> ### Title: Fit nonlinear mixed models using nlmixr
+> ### Aliases: nlmixr.mmkin print.nlmixr.mmkin nlmixr_model nlmixr_data
+> 
+> ### ** Examples
+> 
+> ds <- lapply(experimental_data_for_UBA_2019[6:10],
++  function(x) subset(x$data[c("name", "time", "value")]))
+> names(ds) <- paste("Dataset", 6:10)
+> f_mmkin_parent <- mmkin(c("SFO", "FOMC", "DFOP", "HS"), ds, quiet = TRUE, cores = 1)
+> f_mmkin_parent_tc <- mmkin(c("SFO", "FOMC", "DFOP"), ds, error_model = "tc", 
++   cores = 1, quiet = TRUE)
+> 
+> f_nlmixr_sfo_saem <- nlmixr(f_mmkin_parent["SFO", ], est = "saem")
+Error in nlmixr(f_mmkin_parent["SFO", ], est = "saem") : 
+  could not find function "nlmixr"
+Execution halted
 * checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... SKIPPED
 * checking for unstated dependencies in vignettes ... OK
@@ -72,9 +113,8 @@ Unknown, possibly mis-spelled, fields in DESCRIPTION:
 * checking for detritus in the temp directory ... OK
 * DONE
 
-Status: 1 NOTE
+Status: 1 ERROR, 2 WARNINGs, 1 NOTE
 See
   ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’
 for details.
 
-