diff options
Diffstat (limited to 'check.log')
| -rw-r--r-- | check.log | 59 |
1 files changed, 9 insertions, 50 deletions
@@ -41,38 +41,14 @@ Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK -* checking R code for possible problems ... NOTE -saemix_model: no visible global function definition for - ‘packageVersion’ -Undefined global functions or variables: - packageVersion -Consider adding - importFrom("utils", "packageVersion") -to your NAMESPACE file. +* checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK -* checking Rd cross-references ... WARNING -Missing link or links in documentation object 'nlmixr.mmkin.Rd': - ‘nlmix_model’ ‘summary.nlmixr.mmkin’ - -See section 'Cross-references' in the 'Writing R Extensions' manual. +* checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... WARNING -Undocumented arguments in documentation object 'mean_degparms' - ‘object’ - -Undocumented arguments in documentation object 'nlmixr.mmkin' - ‘data’ ‘table’ ‘error_model’ ‘save’ ‘envir’ -Documented arguments not in \usage in documentation object 'nlmixr.mmkin': - ‘solution_type’ - -Functions with \usage entries need to have the appropriate \alias -entries, and all their arguments documented. -The \usage entries must correspond to syntactically valid R code. -See chapter ‘Writing R documentation files’ in the ‘Writing R -Extensions’ manual. +* checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK @@ -81,28 +57,10 @@ Extensions’ manual. * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... ERROR -Running examples in ‘mkin-Ex.R’ failed -The error most likely occurred in: - -> base::assign(".ptime", proc.time(), pos = "CheckExEnv") -> ### Name: nlmixr.mmkin -> ### Title: Fit nonlinear mixed models using nlmixr -> ### Aliases: nlmixr.mmkin print.nlmixr.mmkin nlmixr_model nlmixr_data -> -> ### ** Examples -> -> ds <- lapply(experimental_data_for_UBA_2019[6:10], -+ function(x) subset(x$data[c("name", "time", "value")])) -> names(ds) <- paste("Dataset", 6:10) -> f_mmkin_parent <- mmkin(c("SFO", "FOMC", "DFOP", "HS"), ds, quiet = TRUE, cores = 1) -> f_mmkin_parent_tc <- mmkin(c("SFO", "FOMC", "DFOP"), ds, error_model = "tc", -+ cores = 1, quiet = TRUE) -> -> f_nlmixr_sfo_saem <- nlmixr(f_mmkin_parent["SFO", ], est = "saem") -Error in nlmixr(f_mmkin_parent["SFO", ], est = "saem") : - could not find function "nlmixr" -Execution halted +* checking examples ... NOTE +Examples with CPU (user + system) or elapsed time > 5s + user system elapsed +nlmixr.mmkin 8.129 0.375 5.384 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK @@ -113,8 +71,9 @@ Execution halted * checking for detritus in the temp directory ... OK * DONE -Status: 1 ERROR, 2 WARNINGs, 1 NOTE +Status: 1 NOTE See ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ for details. + |