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-rw-r--r--docs/articles/prebuilt/2022_dmta_pathway.html65
1 files changed, 34 insertions, 31 deletions
diff --git a/docs/articles/prebuilt/2022_dmta_pathway.html b/docs/articles/prebuilt/2022_dmta_pathway.html
index ea4bd087..2c3f326a 100644
--- a/docs/articles/prebuilt/2022_dmta_pathway.html
+++ b/docs/articles/prebuilt/2022_dmta_pathway.html
@@ -33,7 +33,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.6</span>
</span>
</div>
@@ -74,6 +74,9 @@
<a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
+ <a href="../../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a>
+ </li>
+ <li>
<a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
@@ -135,7 +138,7 @@ residue data on dimethenamid and dimethenamid-P</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 20 April 2023,
-last compiled on 19 Mai 2023</h4>
+last compiled on 30 October 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_pathway.rmd</code></a></small>
<div class="hidden name"><code>2022_dmta_pathway.rmd</code></div>
@@ -155,7 +158,7 @@ can be fitted with the mkin package.</p>
173340 (Application of nonlinear hierarchical models to the kinetic
evaluation of chemical degradation data) of the German Environment
Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.4, which is currently under
+<p>The mkin package is used in version 1.2.6, which is currently under
development. It contains the test data, and the functions used in the
evaluations. The <code>saemix</code> package is used as a backend for
fitting the NLHM, but is also loaded to make the convergence plot
@@ -1976,23 +1979,23 @@ error<a class="anchor" aria-label="anchor" href="#improved-fit-of-the-sforb-path
<div class="section level3">
<h3 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#session-info"></a>
</h3>
-<pre><code>R version 4.3.0 Patched (2023-05-18 r84448)
+<pre><code>R version 4.3.1 (2023-06-16)
Platform: x86_64-pc-linux-gnu (64-bit)
-Running under: Debian GNU/Linux 12 (bookworm)
+Running under: Ubuntu 22.04.3 LTS
Matrix products: default
-BLAS: /home/jranke/svn/R/r-patched/build/lib/libRblas.so
-LAPACK: /usr/lib/x86_64-linux-gnu/openblas-serial/liblapack.so.3; LAPACK version 3.11.0
+BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
+LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
- [1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C
- [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8
- [5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=de_DE.UTF-8
- [7] LC_PAPER=de_DE.UTF-8 LC_NAME=C
+ [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
+ [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
+ [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
+ [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
-[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
+[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
-time zone: Europe/Berlin
+time zone: Europe/Zurich
tzcode source: system (glibc)
attached base packages:
@@ -2000,31 +2003,31 @@ attached base packages:
[8] base
other attached packages:
-[1] saemix_3.2 npde_3.3 knitr_1.42 mkin_1.2.4
+[1] saemix_3.2 npde_3.3 knitr_1.44 mkin_1.2.6
loaded via a namespace (and not attached):
- [1] sass_0.4.6 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
- [5] lattice_0.21-8 digest_0.6.31 magrittr_2.0.3 evaluate_0.21
- [9] grid_4.3.0 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.4
-[13] processx_3.8.1 pkgbuild_1.4.0 deSolve_1.35 DBI_1.1.3
-[17] mclust_6.0.0 ps_1.7.5 gridExtra_2.3 purrr_1.0.1
-[21] fansi_1.0.4 scales_1.2.1 codetools_0.2-19 textshaping_0.3.6
-[25] jquerylib_0.1.4 cli_3.6.1 crayon_1.5.2 rlang_1.1.1
-[29] munsell_0.5.0 cachem_1.0.8 yaml_2.3.7 inline_0.3.19
-[33] tools_4.3.0 memoise_2.0.1 dplyr_1.1.2 colorspace_2.1-0
-[37] ggplot2_3.4.2 vctrs_0.6.2 R6_2.5.1 zoo_1.8-12
-[41] lifecycle_1.0.3 stringr_1.5.0 fs_1.6.2 ragg_1.2.5
+ [1] sass_0.4.7 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
+ [5] lattice_0.21-9 digest_0.6.33 magrittr_2.0.3 evaluate_0.22
+ [9] grid_4.3.1 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.7
+[13] processx_3.8.2 pkgbuild_1.4.2 deSolve_1.35 mclust_6.0.0
+[17] ps_1.7.5 gridExtra_2.3 purrr_1.0.1 fansi_1.0.4
+[21] scales_1.2.1 codetools_0.2-19 textshaping_0.3.6 jquerylib_0.1.4
+[25] cli_3.6.1 crayon_1.5.2 rlang_1.1.1 munsell_0.5.0
+[29] cachem_1.0.8 yaml_2.3.7 inline_0.3.19 tools_4.3.1
+[33] memoise_2.0.1 dplyr_1.1.2 colorspace_2.1-0 ggplot2_3.4.2
+[37] vctrs_0.6.3 R6_2.5.1 zoo_1.8-12 lifecycle_1.0.3
+[41] stringr_1.5.0 fs_1.6.3 MASS_7.3-60 ragg_1.2.5
[45] callr_3.7.3 pkgconfig_2.0.3 desc_1.4.2 pkgdown_2.0.7
-[49] bslib_0.4.2 pillar_1.9.0 gtable_0.3.3 glue_1.6.2
-[53] systemfonts_1.0.4 highr_0.10 xfun_0.39 tibble_3.2.1
-[57] lmtest_0.9-40 tidyselect_1.2.0 htmltools_0.5.5 nlme_3.1-162
-[61] rmarkdown_2.21 compiler_4.3.0 prettyunits_1.1.1</code></pre>
+[49] bslib_0.5.1 pillar_1.9.0 gtable_0.3.3 glue_1.6.2
+[53] systemfonts_1.0.4 xfun_0.40 tibble_3.2.1 lmtest_0.9-40
+[57] tidyselect_1.2.0 rstudioapi_0.15.0 htmltools_0.5.6.1 nlme_3.1-163
+[61] rmarkdown_2.23 compiler_4.3.1 prettyunits_1.2.0</code></pre>
</div>
<div class="section level3">
<h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a>
</h3>
-<pre><code>CPU model: AMD Ryzen 9 7950X 16-Core Processor</code></pre>
-<pre><code>MemTotal: 64925476 kB</code></pre>
+<pre><code>CPU model: Intel(R) Xeon(R) Gold 6134 CPU @ 3.20GHz</code></pre>
+<pre><code>MemTotal: 247605564 kB</code></pre>
</div>
</div>
</div>

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