diff options
Diffstat (limited to 'docs/articles/web_only/benchmarks.html')
| -rw-r--r-- | docs/articles/web_only/benchmarks.html | 149 | 
1 files changed, 81 insertions, 68 deletions
| diff --git a/docs/articles/web_only/benchmarks.html b/docs/articles/web_only/benchmarks.html index 17c2f8d8..3566be42 100644 --- a/docs/articles/web_only/benchmarks.html +++ b/docs/articles/web_only/benchmarks.html @@ -5,86 +5,71 @@  <meta charset="utf-8">  <meta http-equiv="X-UA-Compatible" content="IE=edge">  <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> -<meta name="description" content="mkin">  <title>Benchmark timings for mkin • mkin</title>  <script src="../../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> -<link href="../../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"> -<script src="../../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"> -<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"> -<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../../pkgdown.js"></script><meta property="og:title" content="Benchmark timings for mkin"> -<meta property="og:description" content="mkin"> -<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> -<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> -<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--> +<link href="../../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"> +<script src="../../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"> +<link href="../../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"> +<script src="../../deps/headroom-0.11.0/headroom.min.js"></script><script src="../../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../../deps/search-1.0.0/fuse.min.js"></script><script src="../../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../../pkgdown.js"></script><meta property="og:title" content="Benchmark timings for mkin">  </head>  <body>      <a href="#main" class="visually-hidden-focusable">Skip to contents</a> -     -    <nav class="navbar fixed-top navbar-default navbar-expand-lg bg-light"><div class="container"> -     + +    <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="default" aria-label="Site navigation"><div class="container"> +      <a class="navbar-brand me-2" href="../../index.html">mkin</a> -    <small class="nav-text text-default me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.6</small> +    <small class="nav-text text-default me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.9</small> + -          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">        <span class="navbar-toggler-icon"></span>      </button>      <div id="navbar" class="collapse navbar-collapse ms-3">        <ul class="navbar-nav me-auto"> -<li class="nav-item"> -  <a class="nav-link" href="../../reference/index.html">Reference</a> -</li> +<li class="nav-item"><a class="nav-link" href="../../reference/index.html">Reference</a></li>  <li class="active nav-item dropdown"> -  <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a> -  <div class="dropdown-menu" aria-labelledby="dropdown-articles"> -    <a class="dropdown-item" href="../../articles/mkin.html">Introduction to mkin</a> -    <div class="dropdown-divider"></div> -    <h6 class="dropdown-header" data-toc-skip>Example evaluations with (generalised) nonlinear least squares</h6> -    <a class="dropdown-item" href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a> -    <a class="dropdown-item" href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a> -    <a class="dropdown-item" href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a> -    <div class="dropdown-divider"></div> -    <h6 class="dropdown-header" data-toc-skip>Example evaluations with hierarchical models (nonlinear mixed-effects models)</h6> -    <a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a> -    <a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a> -    <a class="dropdown-item" href="../../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a> -    <a class="dropdown-item" href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a> -    <a class="dropdown-item" href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a> -    <a class="dropdown-item" href="../../articles/web_only/multistart.html">Short demo of the multistart method</a> -    <div class="dropdown-divider"></div> -    <h6 class="dropdown-header" data-toc-skip>Performance</h6> -    <a class="dropdown-item" href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a> -    <a class="dropdown-item" href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a> -    <a class="dropdown-item" href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a> -    <div class="dropdown-divider"></div> -    <h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6> -    <a class="dropdown-item" href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a> -    <a class="dropdown-item" href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> -  </div> -</li> -<li class="nav-item"> -  <a class="nav-link" href="../../news/index.html">News</a> +  <button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button> +  <ul class="dropdown-menu" aria-labelledby="dropdown-articles"> +<li><a class="dropdown-item" href="../../articles/mkin.html">Introduction to mkin</a></li> +    <li><hr class="dropdown-divider"></li> +    <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with (generalised) nonlinear least squares</h6></li> +    <li><a class="dropdown-item" href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a></li> +    <li><a class="dropdown-item" href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a></li> +    <li><hr class="dropdown-divider"></li> +    <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with hierarchical models (nonlinear mixed-effects models)</h6></li> +    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></li> +    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a></li> +    <li><a class="dropdown-item" href="../../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a></li> +    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/multistart.html">Short demo of the multistart method</a></li> +    <li><hr class="dropdown-divider"></li> +    <li><h6 class="dropdown-header" data-toc-skip>Performance</h6></li> +    <li><a class="dropdown-item" href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a></li> +    <li><hr class="dropdown-divider"></li> +    <li><h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6></li> +    <li><a class="dropdown-item" href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a></li> +    <li><a class="dropdown-item" href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a></li> +  </ul>  </li> +<li class="nav-item"><a class="nav-link" href="../../coverage/coverage.html">Test coverage</a></li> +<li class="nav-item"><a class="nav-link" href="../../news/index.html">News</a></li>        </ul> -<form class="form-inline my-2 my-lg-0" role="search"> -        <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../../search.json" id="search-input" placeholder="Search for" autocomplete="off"> -</form> - -      <ul class="navbar-nav"> -<li class="nav-item"> -  <a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="github"> -    <span class="fab fa fab fa-github fa-lg"></span> -      -  </a> -</li> +<ul class="navbar-nav"> +<li class="nav-item"><form class="form-inline" role="search"> + <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../../search.json"> +</form></li> +<li class="nav-item"><a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>        </ul>  </div> -     +    </div>  </nav><div class="container template-article"> @@ -93,12 +78,13 @@  <div class="row">    <main id="main" class="col-md-9"><div class="page-header"> -      <img src="" class="logo" alt=""><h1>Benchmark timings for mkin</h1> + +      <h1>Benchmark timings for mkin</h1>                          <h4 data-toc-skip class="author">Johannes  Ranke</h4>              <h4 data-toc-skip class="date">Last change 17 February 2023 -(rebuilt 2023-11-16)</h4> +(rebuilt 2025-02-13)</h4>        <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/benchmarks.rmd" class="external-link"><code>vignettes/web_only/benchmarks.rmd</code></a></small>        <div class="d-none name"><code>benchmarks.rmd</code></div> @@ -428,6 +414,14 @@ models fitted to two datasets, i.e. eight fits for each test.</p>  <td align="right">1.408</td>  <td align="right">2.041</td>  </tr> +<tr class="even"> +<td align="left">Linux</td> +<td align="left">Ryzen 9 7950X</td> +<td align="left">4.4.2</td> +<td align="left">1.2.9</td> +<td align="right">1.323</td> +<td align="right">1.925</td> +</tr>  </tbody>  </table>  </div> @@ -700,6 +694,15 @@ for each test.</p>  <td align="right">2.228</td>  <td align="right">1.178</td>  </tr> +<tr class="even"> +<td align="left">Linux</td> +<td align="left">Ryzen 9 7950X</td> +<td align="left">4.4.2</td> +<td align="left">1.2.9</td> +<td align="right">0.754</td> +<td align="right">2.153</td> +<td align="right">1.139</td> +</tr>  </tbody>  </table>  </div> @@ -1059,32 +1062,42 @@ dataset, i.e. one fit for each test.</p>  <td align="right">0.749</td>  <td align="right">0.999</td>  </tr> +<tr class="even"> +<td align="left">Linux</td> +<td align="left">Ryzen 9 7950X</td> +<td align="left">4.4.2</td> +<td align="left">1.2.9</td> +<td align="right">0.424</td> +<td align="right">0.534</td> +<td align="right">0.560</td> +<td align="right">1.298</td> +<td align="right">0.735</td> +<td align="right">0.981</td> +</tr>  </tbody>  </table>  </div>  </div> -  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> +  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>      </nav></aside>  </div>      <footer><div class="pkgdown-footer-left"> -  <p></p> -<p>Developed by Johannes Ranke.</p> +  <p>Developed by Johannes Ranke.</p>  </div>  <div class="pkgdown-footer-right"> -  <p></p> -<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>  </div>      </footer>  </div> -   -   + +    </body>  </html> | 
