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-rw-r--r--docs/articles/FOCUS_D.html10
-rw-r--r--docs/articles/FOCUS_L.html44
-rw-r--r--docs/articles/mkin.html2
-rw-r--r--docs/articles/twa.html2
-rw-r--r--docs/articles/web_only/FOCUS_Z.html2
-rw-r--r--docs/articles/web_only/compiled_models.html12
6 files changed, 36 insertions, 36 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index b44462aa..b03e7612 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS Example Dataset D</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>FOCUS_D.Rmd</code></div>
@@ -160,10 +160,10 @@
<p><img src="FOCUS_D_files/figure-html/plot_2-1.png" width="768"></p>
<p>A comprehensive report of the results is obtained using the <code>summary</code> method for <code>mkinfit</code> objects.</p>
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw">summary</span>(fit)</a></code></pre></div>
-<pre><code>## mkin version used for fitting: 0.9.47.5
+<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 17:17:43 2018
-## Date of summary: Fri Sep 14 17:17:44 2018
+## Date of fit: Fri Nov 23 19:58:46 2018
+## Date of summary: Fri Nov 23 19:58:47 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -171,7 +171,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.645 s
+## Fitted with method Port using 153 model solutions performed in 0.736 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index ea49ae10..37b4306f 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>FOCUS_L.Rmd</code></div>
@@ -110,15 +110,15 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:12 2018
-## Date of summary: Tue Sep 18 15:18:12 2018
+## Date of fit: Fri Nov 23 19:58:49 2018
+## Date of summary: Fri Nov 23 19:58:49 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.084 s
+## Fitted with method Port using 37 model solutions performed in 0.095 s
##
## Weighting: none
##
@@ -201,15 +201,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:14 2018
-## Date of summary: Tue Sep 18 15:18:14 2018
+## Date of fit: Fri Nov 23 19:58:51 2018
+## Date of summary: Fri Nov 23 19:58:51 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.321 s
+## Fitted with method Port using 611 model solutions performed in 1.464 s
##
## Weighting: none
##
@@ -296,15 +296,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:14 2018
-## Date of summary: Tue Sep 18 15:18:14 2018
+## Date of fit: Fri Nov 23 19:58:51 2018
+## Date of summary: Fri Nov 23 19:58:51 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.169 s
+## Fitted with method Port using 81 model solutions performed in 0.191 s
##
## Weighting: none
##
@@ -367,8 +367,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:15 2018
-## Date of summary: Tue Sep 18 15:18:15 2018
+## Date of fit: Fri Nov 23 19:58:52 2018
+## Date of summary: Fri Nov 23 19:58:52 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.739 s
+## Fitted with method Port using 336 model solutions performed in 0.824 s
##
## Weighting: none
##
@@ -459,8 +459,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:16 2018
-## Date of summary: Tue Sep 18 15:18:16 2018
+## Date of fit: Fri Nov 23 19:58:53 2018
+## Date of summary: Fri Nov 23 19:58:54 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.301 s
+## Fitted with method Port using 137 model solutions performed in 0.344 s
##
## Weighting: none
##
@@ -560,15 +560,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:17 2018
-## Date of summary: Tue Sep 18 15:18:17 2018
+## Date of fit: Fri Nov 23 19:58:54 2018
+## Date of summary: Fri Nov 23 19:58:54 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.107 s
+## Fitted with method Port using 46 model solutions performed in 0.108 s
##
## Weighting: none
##
@@ -620,15 +620,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Tue Sep 18 15:18:17 2018
-## Date of summary: Tue Sep 18 15:18:17 2018
+## Date of fit: Fri Nov 23 19:58:54 2018
+## Date of summary: Fri Nov 23 19:58:54 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.139 s
+## Fitted with method Port using 66 model solutions performed in 0.159 s
##
## Weighting: none
##
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index e483043b..4ead1062 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -84,7 +84,7 @@
<h1>Introduction to mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>mkin.Rmd</code></div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index d9249f9d..8c053c10 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -84,7 +84,7 @@
<h1>Calculation of time weighted average concentrations with mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>twa.Rmd</code></div>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index a3e743d1..5215e039 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS dataset Z</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>FOCUS_Z.Rmd</code></div>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 684f28cb..85efff61 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -84,7 +84,7 @@
<h1>Performance benefit by using compiled model definitions in mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-18</h4>
+ <h4 class="date">2018-11-23</h4>
<div class="hidden name"><code>compiled_models.Rmd</code></div>
@@ -125,9 +125,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.005 1.000 2.003 0
-## 1 deSolve, not compiled 3 15.480 7.721 15.474 0
-## 2 Eigenvalue based 3 2.460 1.227 2.459 0
+## 3 deSolve, compiled 3 2.284 1.000 2.282 0
+## 1 deSolve, not compiled 3 17.732 7.764 17.724 0
+## 2 Eigenvalue based 3 2.812 1.231 2.809 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -156,8 +156,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 3.524 1.00 3.523 0.000
-## 1 deSolve, not compiled 3 33.021 9.37 33.001 0.004
+## 2 deSolve, compiled 3 4.029 1.000 4.026 0
+## 1 deSolve, not compiled 3 37.760 9.372 37.744 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>

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