aboutsummaryrefslogtreecommitdiff
path: root/docs/articles
diff options
context:
space:
mode:
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html14
-rw-r--r--docs/articles/FOCUS_D_cache/html/data_df09328a15a9c09625fe6f7d481671d8.RDatabin3177 -> 3178 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.RDatabin2735 -> 2735 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdbbin100333 -> 100337 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdxbin168 -> 168 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.RDatabin2935 -> 2934 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdbbin1775 -> 1778 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdxbin147 -> 147 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/plot_2_3aa531f4c45b3e89e3259e0bb1cf7cf7.RDatabin2769 -> 2769 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/plot_7873ad9c0e1495350681617620f6522d.RDatabin2781 -> 2781 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-2_dde491510c0c9edffde4573123e5fa3b.RDatabin4625 -> 4624 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.RDatabin2948 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdbbin1776 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdxbin147 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.RDatabin2747 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdbbin100313 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdxbin170 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.RDatabin2803 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdb0
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.RDatabin2787 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdb0
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.RDatabin4626 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdb0
-rw-r--r--docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-5-1.pngbin74304 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-6-1.pngbin13789 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L.html50
-rw-r--r--docs/articles/FOCUS_L_cache/html/__packages8
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.RDatabin3906 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdbbin94590 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdxbin168 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.RDatabin2846 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdbbin364 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdxbin161 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.RDatabin2942 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdbbin110729 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdxbin185 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.RDatabin4161 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdb0
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.RDatabin2860 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdbbin389 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdxbin161 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.RDatabin2937 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdbbin102249 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdxbin171 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.RDatabin4103 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdb0
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.RDatabin2951 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdbbin473 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdxbin162 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.RDatabin4010 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdbbin94254 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdxbin168 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.RDatabin2828 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdb0
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.RDatabin2824 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdb0
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdxbin113 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.RDatabin3976 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdbbin94578 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdxbin168 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.RDatabin2886 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdbbin411 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdxbin161 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.RDatabin2893 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdbbin94065 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdxbin168 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.RDatabin3898 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdbbin94222 -> 0 bytes
-rw-r--r--docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdxbin168 -> 0 bytes
-rw-r--r--docs/articles/compiled_models.html36
-rw-r--r--docs/articles/compiled_models_files/figure-html/benchmark_FOMC_SFO-1.pngbin9576 -> 9973 bytes
-rw-r--r--docs/articles/compiled_models_files/figure-html/benchmark_SFO_SFO-1.pngbin12059 -> 12199 bytes
-rw-r--r--docs/articles/index.html7
-rw-r--r--docs/articles/mkin.html8
-rw-r--r--docs/articles/mkin_cache/html/__packages9
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.RDatabin3274 -> 0 bytes
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdbbin20269 -> 0 bytes
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdxbin226 -> 0 bytes
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.RDatabin3144 -> 3144 bytes
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdbbin105086 -> 105089 bytes
-rw-r--r--docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdxbin235 -> 235 bytes
-rw-r--r--docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.pngbin45379 -> 112161 bytes
88 files changed, 74 insertions, 58 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index f32d7f82..1c4edbd0 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -24,7 +24,13 @@
<li>
<a href="../news/index.html">News</a>
</li>
- </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="http://github.com/jranke/mkin">
+ <span class="fa fa-github fa-lg"></span>
+
+ </a>
+</li>
+ </ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
@@ -110,8 +116,8 @@
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(fit)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Wed Nov 2 16:25:22 2016
-## Date of summary: Wed Nov 2 16:25:22 2016
+## Date of fit: Fri Nov 4 16:56:20 2016
+## Date of summary: Fri Nov 4 16:56:20 2016
##
## Equations:
## d_parent = - k_parent_sink * parent - k_parent_m1 * parent
@@ -119,7 +125,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.665 s
+## Fitted with method Port using 153 model solutions performed in 0.661 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_D_cache/html/data_df09328a15a9c09625fe6f7d481671d8.RData b/docs/articles/FOCUS_D_cache/html/data_df09328a15a9c09625fe6f7d481671d8.RData
index 969644fa..f670208c 100644
--- a/docs/articles/FOCUS_D_cache/html/data_df09328a15a9c09625fe6f7d481671d8.RData
+++ b/docs/articles/FOCUS_D_cache/html/data_df09328a15a9c09625fe6f7d481671d8.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.RData b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.RData
index 17db087e..9a067af3 100644
--- a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.RData
+++ b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdb b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdb
index 42cdbaff..6379ba02 100644
--- a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdb
+++ b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdb
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdx b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdx
index 5cced058..71b47f70 100644
--- a/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdx
+++ b/docs/articles/FOCUS_D_cache/html/fit_449df36a8c1e5c902ad4f45fc76df647.rdx
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.RData b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.RData
index b170a652..f9619505 100644
--- a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.RData
+++ b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdb b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdb
index 5aae8d68..a1934a4a 100644
--- a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdb
+++ b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdb
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdx b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdx
index 9ecc2d70..f3ea4998 100644
--- a/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdx
+++ b/docs/articles/FOCUS_D_cache/html/model_911bdb95adf8c19a8e50c4150b20f2fc.rdx
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/plot_2_3aa531f4c45b3e89e3259e0bb1cf7cf7.RData b/docs/articles/FOCUS_D_cache/html/plot_2_3aa531f4c45b3e89e3259e0bb1cf7cf7.RData
index 95ceef43..8637b712 100644
--- a/docs/articles/FOCUS_D_cache/html/plot_2_3aa531f4c45b3e89e3259e0bb1cf7cf7.RData
+++ b/docs/articles/FOCUS_D_cache/html/plot_2_3aa531f4c45b3e89e3259e0bb1cf7cf7.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/plot_7873ad9c0e1495350681617620f6522d.RData b/docs/articles/FOCUS_D_cache/html/plot_7873ad9c0e1495350681617620f6522d.RData
index f04428b9..ac6cd420 100644
--- a/docs/articles/FOCUS_D_cache/html/plot_7873ad9c0e1495350681617620f6522d.RData
+++ b/docs/articles/FOCUS_D_cache/html/plot_7873ad9c0e1495350681617620f6522d.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-2_dde491510c0c9edffde4573123e5fa3b.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-2_dde491510c0c9edffde4573123e5fa3b.RData
index 30ad4f31..3c630373 100644
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-2_dde491510c0c9edffde4573123e5fa3b.RData
+++ b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-2_dde491510c0c9edffde4573123e5fa3b.RData
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.RData
deleted file mode 100644
index 580644b8..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdb b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdb
deleted file mode 100644
index f8c084a8..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdx b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdx
deleted file mode 100644
index e0718d0f..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-3_8555aac018c25054a7b7c6e1c3222cbb.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.RData
deleted file mode 100644
index 70504d5a..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdb b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdb
deleted file mode 100644
index 314f58de..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdx b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdx
deleted file mode 100644
index b11317c6..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-4_c4f4f0bac445d50ee790d1ce8921103e.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.RData
deleted file mode 100644
index 8a7ff122..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdb b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdx b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-5_e12b7460b9b5808704fd83e871da502a.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.RData
deleted file mode 100644
index 675d9215..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdb b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdx b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-6_86fcc5fbb808b9fc011ed172dce76d10.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.RData b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.RData
deleted file mode 100644
index 0dcf0e32..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdb b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdx b/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_D_cache/html/unnamed-chunk-7_940a932199b6610a3d4e88a8ba9f3d29.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-5-1.png
deleted file mode 100644
index c0b0c2db..00000000
--- a/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-5-1.png
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-6-1.png
deleted file mode 100644
index 6700e527..00000000
--- a/docs/articles/FOCUS_D_files/figure-html/unnamed-chunk-6-1.png
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 6a9c6ba5..2244a359 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -24,7 +24,13 @@
<li>
<a href="../news/index.html">News</a>
</li>
- </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="http://github.com/jranke/mkin">
+ <span class="fa fa-github fa-lg"></span>
+
+ </a>
+</li>
+ </ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
@@ -57,15 +63,15 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
<span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:03 2016
-## Date of summary: Fri Nov 4 15:38:03 2016
+## Date of fit: Fri Nov 4 16:56:21 2016
+## Date of summary: Fri Nov 4 16:56:21 2016
##
## Equations:
## d_parent = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.089 s
+## Fitted with method Port using 37 model solutions performed in 0.087 s
##
## Weighting: none
##
@@ -150,8 +156,8 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:04 2016
-## Date of summary: Fri Nov 4 15:38:04 2016
+## Date of fit: Fri Nov 4 16:56:21 2016
+## Date of summary: Fri Nov 4 16:56:21 2016
##
##
## Warning: Optimisation by method Port did not converge.
@@ -163,7 +169,7 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 188 model solutions performed in 0.446 s
+## Fitted with method Port using 188 model solutions performed in 0.46 s
##
## Weighting: none
##
@@ -247,15 +253,15 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:05 2016
-## Date of summary: Fri Nov 4 15:38:05 2016
+## Date of fit: Fri Nov 4 16:56:22 2016
+## Date of summary: Fri Nov 4 16:56:22 2016
##
## Equations:
## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.19 s
+## Fitted with method Port using 81 model solutions performed in 0.199 s
##
## Weighting: none
##
@@ -317,8 +323,8 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:06 2016
-## Date of summary: Fri Nov 4 15:38:06 2016
+## Date of fit: Fri Nov 4 16:56:23 2016
+## Date of summary: Fri Nov 4 16:56:23 2016
##
## Equations:
## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -327,7 +333,7 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.815 s
+## Fitted with method Port using 336 model solutions performed in 0.81 s
##
## Weighting: none
##
@@ -406,8 +412,8 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:07 2016
-## Date of summary: Fri Nov 4 15:38:07 2016
+## Date of fit: Fri Nov 4 16:56:24 2016
+## Date of summary: Fri Nov 4 16:56:25 2016
##
## Equations:
## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -416,7 +422,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.339 s
+## Fitted with method Port using 137 model solutions performed in 0.335 s
##
## Weighting: none
##
@@ -506,15 +512,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:07 2016
-## Date of summary: Fri Nov 4 15:38:08 2016
+## Date of fit: Fri Nov 4 16:56:25 2016
+## Date of summary: Fri Nov 4 16:56:25 2016
##
## Equations:
## d_parent = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.112 s
+## Fitted with method Port using 46 model solutions performed in 0.109 s
##
## Weighting: none
##
@@ -566,15 +572,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.44.9000
## R version: 3.3.2
-## Date of fit: Fri Nov 4 15:38:08 2016
-## Date of summary: Fri Nov 4 15:38:08 2016
+## Date of fit: Fri Nov 4 16:56:25 2016
+## Date of summary: Fri Nov 4 16:56:25 2016
##
## Equations:
## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.148 s
+## Fitted with method Port using 66 model solutions performed in 0.16 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_L_cache/html/__packages b/docs/articles/FOCUS_L_cache/html/__packages
deleted file mode 100644
index 8042c1f3..00000000
--- a/docs/articles/FOCUS_L_cache/html/__packages
+++ /dev/null
@@ -1,8 +0,0 @@
-base
-minpack.lm
-rootSolve
-inline
-mkin
-knitr
-microbenchmark
-ggplot2
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.RData
deleted file mode 100644
index ed0c5a13..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdb
deleted file mode 100644
index e3db00f2..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdx
deleted file mode 100644
index 70daf843..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-10_17bd4df3f9dbbfdb646235ad948e7903.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.RData
deleted file mode 100644
index 6727797f..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdb
deleted file mode 100644
index cc81096d..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdx
deleted file mode 100644
index 9c4afcfd..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-11_55afc351baf052d70313229bbfe083b1.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.RData
deleted file mode 100644
index f1fd1a1e..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdb
deleted file mode 100644
index 06f854c7..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdx
deleted file mode 100644
index 7fe7b836..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-12_475fd4322218ba45b9d4c6570ce82306.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.RData
deleted file mode 100644
index c6df11f0..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-13_fe41237f20ce0e1192c2720eb7747508.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.RData
deleted file mode 100644
index cb12b63e..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdb
deleted file mode 100644
index 4bc303bf..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdx
deleted file mode 100644
index e25dd615..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-14_d1d0018379d20457895c7e55068a1dd4.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.RData
deleted file mode 100644
index cca9f00d..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdb
deleted file mode 100644
index 504ba4a3..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdx
deleted file mode 100644
index 9adbac6d..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-15_455b679cd6cc9762c244b80513c515c8.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.RData
deleted file mode 100644
index 0a05f4f5..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-16_f0c16cb42c39ff3e0802b1bed681fcd7.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.RData
deleted file mode 100644
index 89b8234c..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdb
deleted file mode 100644
index 05a10d06..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdx
deleted file mode 100644
index 1c1f9696..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-2_6d7c6df950fe0059e9d9a95eee862d26.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.RData
deleted file mode 100644
index 2a76a0d2..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdb
deleted file mode 100644
index 9edd1973..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdx
deleted file mode 100644
index dbf0a9e4..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-3_b475c6205236b47de3205266a85d05eb.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.RData
deleted file mode 100644
index b950c4bc..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-4_4baef7cf5b3c7ae95499feb05dc0e5fa.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.RData
deleted file mode 100644
index 59911e29..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdb
deleted file mode 100644
index e69de29b..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdb
+++ /dev/null
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdx
deleted file mode 100644
index 4a053a44..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-5_99a08d47988f0a43ccc269459e2a16f2.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.RData
deleted file mode 100644
index 70899dc6..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdb
deleted file mode 100644
index f8510279..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdx
deleted file mode 100644
index e8b039d3..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-6_f68425c53adf6d973b0313f640ab22c4.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.RData
deleted file mode 100644
index 2aac9f45..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdb
deleted file mode 100644
index 11549909..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdx
deleted file mode 100644
index 1fa42d6e..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-7_7e8f2e6290a4398ce495c06f62b5eb5a.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.RData
deleted file mode 100644
index 2d69bb7d..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdb
deleted file mode 100644
index 57d39958..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdx
deleted file mode 100644
index 4473deeb..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-8_50faede8d3b8c141ad3337c437834082.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.RData b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.RData
deleted file mode 100644
index 231deb0f..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdb b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdb
deleted file mode 100644
index 609d7b43..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdx b/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdx
deleted file mode 100644
index 6c25eae6..00000000
--- a/docs/articles/FOCUS_L_cache/html/unnamed-chunk-9_4097275e9142f8a1f53afaf3c3c84573.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index 09039f62..e1572b17 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -24,7 +24,13 @@
<li>
<a href="../news/index.html">News</a>
</li>
- </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="http://github.com/jranke/mkin">
+ <span class="fa fa-github fa-lg"></span>
+
+ </a>
+</li>
+ </ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
@@ -72,21 +78,21 @@ mb<span class="fl">.1</span> &lt;-<span class="st"> </span><span class="kw">micr
<span class="kw">print</span>(mb<span class="fl">.1</span>)</code></pre></div>
<pre><code>## Unit: milliseconds
## expr min lq mean median uq
-## deSolve, not compiled 6581.1731 6598.7831 6630.0395 6616.3931 6654.4726
-## Eigenvalue based 880.1617 890.3517 911.2758 900.5416 926.8328
-## deSolve, compiled 739.4343 749.6078 753.6543 759.7813 760.7643
+## deSolve, not compiled 6326.4518 6378.7429 6476.2219 6431.0341 6551.1069
+## Eigenvalue based 925.7797 935.9924 939.8725 946.2051 946.9189
+## deSolve, compiled 740.2821 750.0017 767.8440 759.7212 781.6249
## max neval cld
-## 6692.5522 3 c
-## 953.1240 3 b
-## 761.7474 3 a</code></pre>
+## 6671.1797 3 b
+## 947.6327 3 a
+## 803.5287 3 a</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">autoplot</span>(mb<span class="fl">.1</span>)</code></pre></div>
<p><img src="compiled_models_files/figure-html/benchmark_SFO_SFO-1.png" width="672"></p>
-<p>We see that using the compiled model is by a factor of 8.7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs:</p>
+<p>We see that using the compiled model is by a factor of 8.5 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs:</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">rownames</span>(smb<span class="fl">.1</span>) &lt;-<span class="st"> </span>smb<span class="fl">.1</span>$expr
smb<span class="fl">.1</span>[<span class="st">"median"</span>]/smb<span class="fl">.1</span>[<span class="st">"deSolve, compiled"</span>, <span class="st">"median"</span>]</code></pre></div>
<pre><code>## median
-## deSolve, not compiled 8.708286
-## Eigenvalue based 1.185264
+## deSolve, not compiled 8.464993
+## Eigenvalue based 1.245464
## deSolve, compiled 1.000000</code></pre>
</div>
<div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2">
@@ -108,18 +114,18 @@ smb<span class="fl">.1</span>[<span class="st">"median"</span>]/smb<span class="
<span class="kw">print</span>(mb<span class="fl">.2</span>)</code></pre></div>
<pre><code>## Unit: seconds
## expr min lq mean median uq
-## deSolve, not compiled 13.756286 13.813205 13.874083 13.870125 13.932982
-## deSolve, compiled 1.323196 1.372916 1.391915 1.422635 1.426274
+## deSolve, not compiled 13.619556 13.761382 13.825679 13.903207 13.928741
+## deSolve, compiled 1.316871 1.322577 1.358847 1.328283 1.379834
## max neval cld
-## 13.995838 3 b
-## 1.429913 3 a</code></pre>
+## 13.954275 3 b
+## 1.431386 3 a</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">smb<span class="fl">.2</span>[<span class="st">"median"</span>]/smb<span class="fl">.2</span>[<span class="st">"deSolve, compiled"</span>, <span class="st">"median"</span>]</code></pre></div>
<pre><code>## median
## 1 NA
## 2 NA</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">autoplot</span>(mb<span class="fl">.2</span>)</code></pre></div>
<p><img src="compiled_models_files/figure-html/benchmark_FOMC_SFO-1.png" width="672"></p>
-<p>Here we get a performance benefit of a factor of 9.7 using the version of the differential equation model compiled from C code!</p>
+<p>Here we get a performance benefit of a factor of 10.5 using the version of the differential equation model compiled from C code!</p>
<p>This vignette was built with mkin 0.9.44.9000 on</p>
<pre><code>## R version 3.3.2 (2016-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/docs/articles/compiled_models_files/figure-html/benchmark_FOMC_SFO-1.png b/docs/articles/compiled_models_files/figure-html/benchmark_FOMC_SFO-1.png
index 51846e6c..57730131 100644
--- a/docs/articles/compiled_models_files/figure-html/benchmark_FOMC_SFO-1.png
+++ b/docs/articles/compiled_models_files/figure-html/benchmark_FOMC_SFO-1.png
Binary files differ
diff --git a/docs/articles/compiled_models_files/figure-html/benchmark_SFO_SFO-1.png b/docs/articles/compiled_models_files/figure-html/benchmark_SFO_SFO-1.png
index f6e4cb08..50adff32 100644
--- a/docs/articles/compiled_models_files/figure-html/benchmark_SFO_SFO-1.png
+++ b/docs/articles/compiled_models_files/figure-html/benchmark_SFO_SFO-1.png
Binary files differ
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 9f7cdd74..cd6a7bea 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -60,7 +60,12 @@
</ul>
<ul class="nav navbar-nav navbar-right">
-
+ <li>
+ <a href="http://github.com/jranke/mkin">
+ <span class="fa fa-github fa-lg"></span>
+
+ </a>
+</li>
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index 5f6ae46c..8a24352c 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -24,7 +24,13 @@
<li>
<a href="../news/index.html">News</a>
</li>
- </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="http://github.com/jranke/mkin">
+ <span class="fa fa-github fa-lg"></span>
+
+ </a>
+</li>
+ </ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
diff --git a/docs/articles/mkin_cache/html/__packages b/docs/articles/mkin_cache/html/__packages
index 03ece635..c8b1e877 100644
--- a/docs/articles/mkin_cache/html/__packages
+++ b/docs/articles/mkin_cache/html/__packages
@@ -1,13 +1,8 @@
base
-datasets
-utils
-grDevices
-graphics
-stats
knitr
minpack.lm
rootSolve
-methods
inline
-parallel
mkin
+microbenchmark
+ggplot2
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.RData b/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.RData
deleted file mode 100644
index d11ccf31..00000000
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.RData
+++ /dev/null
Binary files differ
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdb b/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdb
deleted file mode 100644
index 5ac4f484..00000000
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdb
+++ /dev/null
Binary files differ
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdx b/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdx
deleted file mode 100644
index 8983f69e..00000000
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_60bc93a2c97228ef4815e972498edefa.rdx
+++ /dev/null
Binary files differ
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.RData b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.RData
index 8fd3567d..e52d9b7b 100644
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.RData
+++ b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.RData
Binary files differ
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdb b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdb
index 7f4d6c92..ff7ed49e 100644
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdb
+++ b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdb
Binary files differ
diff --git a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdx b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdx
index 7f5f16b7..7ec72c33 100644
--- a/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdx
+++ b/docs/articles/mkin_cache/html/unnamed-chunk-2_f17bce9fa804585d9877abdce3dac24a.rdx
Binary files differ
diff --git a/docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.png b/docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.png
index 2e7e2244..d34e3805 100644
--- a/docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.png
+++ b/docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.png
Binary files differ

Contact - Imprint