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Diffstat (limited to 'docs/articles')
-rw-r--r-- | docs/articles/FOCUS_D.html | 8 | ||||
-rw-r--r-- | docs/articles/FOCUS_L.html | 42 | ||||
-rw-r--r-- | docs/articles/mkin.html | 2 | ||||
-rw-r--r-- | docs/articles/twa.html | 2 | ||||
-rw-r--r-- | docs/articles/web_only/FOCUS_Z.html | 2 | ||||
-rw-r--r-- | docs/articles/web_only/compiled_models.html | 12 |
6 files changed, 34 insertions, 34 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 0875ce0f..5c1cc0dd 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -85,7 +85,7 @@ <h1>Example evaluation of FOCUS Example Dataset D</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>FOCUS_D.Rmd</code></div> @@ -163,8 +163,8 @@ <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:02 2019 -## Date of summary: Mon Feb 25 15:25:02 2019 +## Date of fit: Tue Feb 26 09:29:03 2019 +## Date of summary: Tue Feb 26 09:29:03 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -172,7 +172,7 @@ ## ## Model predictions using solution type deSolve ## -## Fitted with method Port using 153 model solutions performed in 0.689 s +## Fitted with method Port using 153 model solutions performed in 0.681 s ## ## Weighting: none ## diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 14827789..57bd4d34 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -85,7 +85,7 @@ <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>FOCUS_L.Rmd</code></div> @@ -111,15 +111,15 @@ <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:04 2019 -## Date of summary: Mon Feb 25 15:25:04 2019 +## Date of fit: Tue Feb 26 09:29:05 2019 +## Date of summary: Tue Feb 26 09:29:05 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.096 s +## Fitted with method Port using 37 model solutions performed in 0.095 s ## ## Weighting: none ## @@ -202,15 +202,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:06 2019 -## Date of summary: Mon Feb 25 15:25:06 2019 +## Date of fit: Tue Feb 26 09:29:06 2019 +## Date of summary: Tue Feb 26 09:29:06 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.516 s +## Fitted with method Port using 611 model solutions performed in 1.51 s ## ## Weighting: none ## @@ -297,15 +297,15 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:06 2019 -## Date of summary: Mon Feb 25 15:25:06 2019 +## Date of fit: Tue Feb 26 09:29:07 2019 +## Date of summary: Tue Feb 26 09:29:07 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.198 s +## Fitted with method Port using 81 model solutions performed in 0.196 s ## ## Weighting: none ## @@ -368,8 +368,8 @@ <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:07 2019 -## Date of summary: Mon Feb 25 15:25:07 2019 +## Date of fit: Tue Feb 26 09:29:08 2019 +## Date of summary: Tue Feb 26 09:29:08 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -378,7 +378,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.85 s +## Fitted with method Port using 336 model solutions performed in 0.843 s ## ## Weighting: none ## @@ -460,8 +460,8 @@ <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:08 2019 -## Date of summary: Mon Feb 25 15:25:09 2019 +## Date of fit: Tue Feb 26 09:29:09 2019 +## Date of summary: Tue Feb 26 09:29:09 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -470,7 +470,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.346 s +## Fitted with method Port using 137 model solutions performed in 0.343 s ## ## Weighting: none ## @@ -561,8 +561,8 @@ <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:09 2019 -## Date of summary: Mon Feb 25 15:25:09 2019 +## Date of fit: Tue Feb 26 09:29:10 2019 +## Date of summary: Tue Feb 26 09:29:10 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -621,15 +621,15 @@ <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 15:25:09 2019 -## Date of summary: Mon Feb 25 15:25:09 2019 +## Date of fit: Tue Feb 26 09:29:10 2019 +## Date of summary: Tue Feb 26 09:29:10 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 66 model solutions performed in 0.164 s +## Fitted with method Port using 66 model solutions performed in 0.163 s ## ## Weighting: none ## diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index 24520f74..f6e8af4d 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -85,7 +85,7 @@ <h1>Introduction to mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>mkin.Rmd</code></div> diff --git a/docs/articles/twa.html b/docs/articles/twa.html index bf56eff2..c06672f1 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -85,7 +85,7 @@ <h1>Calculation of time weighted average concentrations with mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>twa.Rmd</code></div> diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index 48f08bfc..b398733b 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -85,7 +85,7 @@ <h1>Example evaluation of FOCUS dataset Z</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>FOCUS_Z.Rmd</code></div> diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 16f0cc7a..6d4d1e42 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -85,7 +85,7 @@ <h1>Performance benefit by using compiled model definitions in mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-02-25</h4> + <h4 class="date">2019-02-26</h4> <div class="hidden name"><code>compiled_models.Rmd</code></div> @@ -126,9 +126,9 @@ <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.328 1.000 2.327 0 -## 1 deSolve, not compiled 3 17.641 7.578 17.633 0 -## 2 Eigenvalue based 3 2.873 1.234 2.871 0 +## 3 deSolve, compiled 3 2.323 1.000 2.321 0 +## 1 deSolve, not compiled 3 17.568 7.563 17.559 0 +## 2 Eigenvalue based 3 2.884 1.241 2.883 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 @@ -157,8 +157,8 @@ <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 4.126 1.000 4.125 0 -## 1 deSolve, not compiled 3 37.487 9.086 37.467 0 +## 2 deSolve, compiled 3 4.078 1.000 4.075 0 +## 1 deSolve, not compiled 3 37.246 9.133 37.231 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> |