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Diffstat (limited to 'docs/articles')
| -rw-r--r-- | docs/articles/FOCUS_L.html | 38 | ||||
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 12 |
2 files changed, 25 insertions, 25 deletions
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index daf887e6..b53ab0d0 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -111,15 +111,15 @@ <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:32 2019 -## Date of summary: Thu Jan 31 15:37:32 2019 +## Date of fit: Thu Jan 31 15:43:40 2019 +## Date of summary: Thu Jan 31 15:43:40 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.095 s +## Fitted with method Port using 37 model solutions performed in 0.094 s ## ## Weighting: none ## @@ -202,15 +202,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:34 2019 -## Date of summary: Thu Jan 31 15:37:34 2019 +## Date of fit: Thu Jan 31 15:43:42 2019 +## Date of summary: Thu Jan 31 15:43:42 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.492 s +## Fitted with method Port using 611 model solutions performed in 1.502 s ## ## Weighting: none ## @@ -297,15 +297,15 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:35 2019 -## Date of summary: Thu Jan 31 15:37:35 2019 +## Date of fit: Thu Jan 31 15:43:42 2019 +## Date of summary: Thu Jan 31 15:43:42 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.196 s +## Fitted with method Port using 81 model solutions performed in 0.195 s ## ## Weighting: none ## @@ -368,8 +368,8 @@ <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:36 2019 -## Date of summary: Thu Jan 31 15:37:36 2019 +## Date of fit: Thu Jan 31 15:43:43 2019 +## Date of summary: Thu Jan 31 15:43:43 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -378,7 +378,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.837 s +## Fitted with method Port using 336 model solutions performed in 0.836 s ## ## Weighting: none ## @@ -460,8 +460,8 @@ <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:37 2019 +## Date of fit: Thu Jan 31 15:43:44 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -470,7 +470,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.344 s +## Fitted with method Port using 137 model solutions performed in 0.34 s ## ## Weighting: none ## @@ -561,8 +561,8 @@ <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:38 2019 +## Date of fit: Thu Jan 31 15:43:45 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -621,8 +621,8 @@ <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.5 ## R version used for fitting: 3.5.2 -## Date of fit: Thu Jan 31 15:37:37 2019 -## Date of summary: Thu Jan 31 15:37:38 2019 +## Date of fit: Thu Jan 31 15:43:45 2019 +## Date of summary: Thu Jan 31 15:43:45 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index a1fa69f5..d7d76b49 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -126,14 +126,14 @@ <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.319 1.000 2.317 0.000 -## 1 deSolve, not compiled 3 17.483 7.539 17.473 0.000 -## 2 Eigenvalue based 3 2.857 1.232 2.852 0.003 +## 3 deSolve, compiled 3 2.331 1.000 2.330 0 +## 1 deSolve, not compiled 3 17.369 7.451 17.360 0 +## 2 Eigenvalue based 3 2.878 1.235 2.876 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 ## 2 0 0</code></pre> -<p>We see that using the compiled model is by a factor of around 8 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> +<p>We see that using the compiled model is by a factor of around 7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> </div> <div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2"> <h2 class="hasAnchor"> @@ -157,8 +157,8 @@ <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 4.102 1.000 4.100 0 -## 1 deSolve, not compiled 3 37.059 9.034 37.041 0 +## 2 deSolve, compiled 3 4.120 1.000 4.116 0 +## 1 deSolve, not compiled 3 37.011 8.983 36.993 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> |