diff options
Diffstat (limited to 'docs/articles')
| -rw-r--r-- | docs/articles/FOCUS_D.html | 8 | ||||
| -rw-r--r-- | docs/articles/FOCUS_L.html | 44 | ||||
| -rw-r--r-- | docs/articles/mkin.html | 2 | ||||
| -rw-r--r-- | docs/articles/twa.html | 4 | ||||
| -rw-r--r-- | docs/articles/web_only/FOCUS_Z.html | 2 | ||||
| -rw-r--r-- | docs/articles/web_only/NAFTA_examples.html | 2 | ||||
| -rw-r--r-- | docs/articles/web_only/benchmarks.html | 24 | ||||
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 12 | 
8 files changed, 49 insertions, 49 deletions
| diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index be1f40f5..88a3fa6a 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -88,7 +88,7 @@        <h1>Example evaluation of FOCUS Example Dataset D</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>FOCUS_D.Rmd</code></div> @@ -168,8 +168,8 @@  <div class="sourceCode" id="cb11"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb11-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:49 2019  -## Date of summary: Wed Jun  5 15:10:50 2019  +## Date of fit:     Wed Jul  3 16:39:00 2019  +## Date of summary: Wed Jul  3 16:39:00 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -177,7 +177,7 @@  ##   ## Model predictions using solution type deSolve   ##  -## Fitted using 389 model solutions performed in 0.984 s +## Fitted using 389 model solutions performed in 0.977 s  ##   ## Error model: Constant variance   ##  diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 4388edd2..1b54252f 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -88,7 +88,7 @@        <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>FOCUS_L.Rmd</code></div> @@ -114,15 +114,15 @@  <a class="sourceLine" id="cb2-2" title="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:52 2019  -## Date of summary: Wed Jun  5 15:10:52 2019  +## Date of fit:     Wed Jul  3 16:39:02 2019  +## Date of summary: Wed Jul  3 16:39:02 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 133 model solutions performed in 0.277 s +## Fitted using 133 model solutions performed in 0.279 s  ##   ## Error model: Constant variance   ##  @@ -216,8 +216,8 @@  ## finite result is doubtful</code></pre>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:54 2019  -## Date of summary: Wed Jun  5 15:10:54 2019  +## Date of fit:     Wed Jul  3 16:39:04 2019  +## Date of summary: Wed Jul  3 16:39:04 2019   ##   ##   ## Warning: Optimisation did not converge: @@ -229,7 +229,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 899 model solutions performed in 1.877 s +## Fitted using 899 model solutions performed in 1.874 s  ##   ## Error model: Constant variance   ##  @@ -321,15 +321,15 @@  <div class="sourceCode" id="cb17"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb17-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:55 2019  -## Date of summary: Wed Jun  5 15:10:55 2019  +## Date of fit:     Wed Jul  3 16:39:05 2019  +## Date of summary: Wed Jul  3 16:39:05 2019   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 239 model solutions performed in 0.492 s +## Fitted using 239 model solutions performed in 0.485 s  ##   ## Error model: Constant variance   ##  @@ -397,8 +397,8 @@  <div class="sourceCode" id="cb20"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb20-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:56 2019  -## Date of summary: Wed Jun  5 15:10:56 2019  +## Date of fit:     Wed Jul  3 16:39:07 2019  +## Date of summary: Wed Jul  3 16:39:07 2019   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -407,7 +407,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 572 model solutions performed in 1.183 s +## Fitted using 572 model solutions performed in 1.19 s  ##   ## Error model: Constant variance   ##  @@ -497,8 +497,8 @@  <div class="sourceCode" id="cb24"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb24-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:58 2019  -## Date of summary: Wed Jun  5 15:10:58 2019  +## Date of fit:     Wed Jul  3 16:39:08 2019  +## Date of summary: Wed Jul  3 16:39:09 2019   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -507,7 +507,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 373 model solutions performed in 0.773 s +## Fitted using 373 model solutions performed in 0.772 s  ##   ## Error model: Constant variance   ##  @@ -603,15 +603,15 @@  <div class="sourceCode" id="cb29"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb29-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:59 2019  -## Date of summary: Wed Jun  5 15:10:59 2019  +## Date of fit:     Wed Jul  3 16:39:09 2019  +## Date of summary: Wed Jul  3 16:39:10 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 142 model solutions performed in 0.288 s +## Fitted using 142 model solutions performed in 0.29 s  ##   ## Error model: Constant variance   ##  @@ -668,15 +668,15 @@  <div class="sourceCode" id="cb31"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb31-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.49.5   ## R version used for fitting:       3.6.0  -## Date of fit:     Wed Jun  5 15:10:59 2019  -## Date of summary: Wed Jun  5 15:10:59 2019  +## Date of fit:     Wed Jul  3 16:39:10 2019  +## Date of summary: Wed Jul  3 16:39:10 2019   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted using 224 model solutions performed in 0.453 s +## Fitted using 224 model solutions performed in 0.452 s  ##   ## Error model: Constant variance   ##  diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index 5977d642..df694259 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -88,7 +88,7 @@        <h1>Introduction to mkin</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>mkin.Rmd</code></div> diff --git a/docs/articles/twa.html b/docs/articles/twa.html index f98026e7..34b85796 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -88,7 +88,7 @@        <h1>Calculation of time weighted average concentrations with mkin</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>twa.Rmd</code></div> @@ -98,7 +98,7 @@  <p>Since version 0.9.45.1 of the ‘mkin’ package, a function for calculating time weighted average concentrations for decline kinetics (<em>i.e.</em> only for the compound applied in the experiment) is included. Strictly speaking, they are maximum moving window time weighted average concentrations, <em>i.e.</em> the maximum time weighted average concentration that can be found when moving a time window of a specified width over the decline curve.</p> -<p>Time weighted average concentrations for the SFO, FOMC and the DFOMP model are calculated using the formulas given in the FOCUS kinetics guidance <span class="citation">(FOCUS Work Group on Degradation Kinetics 2014, 251)</span>:</p> +<p>Time weighted average concentrations for the SFO, FOMC and the DFOP model are calculated using the formulas given in the FOCUS kinetics guidance <span class="citation">(FOCUS Work Group on Degradation Kinetics 2014, 251)</span>:</p>  <p>SFO:</p>  <p><span class="math display">\[c_\textrm{twa} = c_0 \frac{\left( 1 - e^{- k t} \right)}{ k t} \]</span></p>  <p>FOMC:</p> diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index 542deb14..b82e1e01 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -88,7 +88,7 @@        <h1>Example evaluation of FOCUS dataset Z</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>FOCUS_Z.Rmd</code></div> diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html index 4cd16437..c1922b64 100644 --- a/docs/articles/web_only/NAFTA_examples.html +++ b/docs/articles/web_only/NAFTA_examples.html @@ -88,7 +88,7 @@        <h1>Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>NAFTA_examples.Rmd</code></div> diff --git a/docs/articles/web_only/benchmarks.html b/docs/articles/web_only/benchmarks.html index 507bdb61..c68db93b 100644 --- a/docs/articles/web_only/benchmarks.html +++ b/docs/articles/web_only/benchmarks.html @@ -88,7 +88,7 @@        <h1>Benchmark timings for mkin on various systems</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>benchmarks.Rmd</code></div> @@ -202,77 +202,77 @@  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 7.064  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 7.296  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 5.936 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 5.828 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 5.820  ##                                                                         t2  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 11.019  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 22.889  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 12.558  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 21.239  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 20.545 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 35.869 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 35.917  ##                                                                        t3  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 3.764  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 4.649  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 4.786  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 4.510  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 4.446 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 4.412 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 4.415  ##                                                                         t4  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 14.347  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 13.789  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2  8.461  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 13.805  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 15.335 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 30.497 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 30.588  ##                                                                         t5  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1  9.495  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1  6.395  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2  5.675  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3  7.386  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4  6.002 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 10.329 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 10.317  ##                                                                        t6  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 2.623  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 2.542  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 2.723  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 2.643  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 2.635 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 2.548 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 2.556  ##                                                                        t7  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 4.587  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 4.128  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 4.478  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 4.374  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 4.259 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 4.192 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 4.213  ##                                                                        t8  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 7.525  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 4.632  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 4.862  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3  7.02  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 4.737 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 7.827 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 7.851  ##                                                                         t9  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 16.621  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1  8.171  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2  7.618  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 11.124  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4  7.763 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 15.653 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 15.645  ##                                                                       t10  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 8.576  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 3.676  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 3.579  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 5.388  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 3.427 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 7.762 +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 7.734  ##                                                                        t11  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 31.267  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1  5.636  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2  5.574  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3  7.365  ## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4  5.626 -## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 10.512</code></pre> +## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.5 10.489</code></pre>  <div class="sourceCode" id="cb17"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb17-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/save">save</a></span>(mkin_benchmarks, <span class="dt">file =</span> <span class="st">"~/git/mkin/vignettes/mkin_benchmarks.rda"</span>)</a></code></pre></div>  </div>    </div> diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 5f0301fc..b30488a0 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -88,7 +88,7 @@        <h1>Performance benefit by using compiled model definitions in mkin</h1>                          <h4 class="author">Johannes Ranke</h4> -            <h4 class="date">2019-06-05</h4> +            <h4 class="date">2019-07-03</h4>        <div class="hidden name"><code>compiled_models.Rmd</code></div> @@ -163,9 +163,9 @@  ## Warning in mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "deSolve", quiet  ## = TRUE): Observations with value of zero were removed from the data</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 3     deSolve, compiled            3   3.041    1.000     3.039        0 -## 1 deSolve, not compiled            3  28.429    9.349    28.415        0 -## 2      Eigenvalue based            3   4.291    1.411     4.288        0 +## 3     deSolve, compiled            3   3.043    1.000     3.042        0 +## 1 deSolve, not compiled            3  28.630    9.408    28.616        0 +## 2      Eigenvalue based            3   4.291    1.410     4.289        0  ##   user.child sys.child  ## 3          0         0  ## 1          0         0 @@ -214,8 +214,8 @@  ## Warning in mkinfit(FOMC_SFO, FOCUS_2006_D, quiet = TRUE): Observations with  ## value of zero were removed from the data</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 2     deSolve, compiled            3   4.927    1.000     4.924        0 -## 1 deSolve, not compiled            3  53.138   10.785    53.108        0 +## 2     deSolve, compiled            3   4.800    1.000     4.795    0.002 +## 1 deSolve, not compiled            3  53.371   11.119    53.346    0.000  ##   user.child sys.child  ## 2          0         0  ## 1          0         0</code></pre> | 
